Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18320 and ABID97_RS18325 are separated by 124 nucleotides ABID97_RS18325 and ABID97_RS18330 are separated by 64 nucleotides
ABID97_RS18320: ABID97_RS18320 - J domain-containing protein, at 3,789,319 to 3,790,476
_RS18320
ABID97_RS18325: ABID97_RS18325 - hypothetical protein, at 3,790,601 to 3,790,918
_RS18325
ABID97_RS18330: ABID97_RS18330 - hypothetical protein, at 3,790,983 to 3,791,477
_RS18330
Position (kb)
3789
3790
3791 Strain fitness (log2 ratio)
-2
-1
0
1 at 3788.547 kb on + strand at 3788.548 kb on - strand at 3788.728 kb on + strand at 3788.728 kb on + strand at 3788.729 kb on - strand at 3788.729 kb on - strand at 3788.822 kb on - strand at 3788.822 kb on - strand at 3788.917 kb on - strand at 3788.923 kb on + strand at 3789.009 kb on + strand at 3789.010 kb on - strand at 3789.040 kb on - strand at 3789.320 kb on + strand at 3789.403 kb on - strand at 3789.408 kb on - strand at 3789.437 kb on + strand, within ABID97_RS18320 at 3789.437 kb on + strand, within ABID97_RS18320 at 3789.468 kb on - strand, within ABID97_RS18320 at 3789.468 kb on - strand, within ABID97_RS18320 at 3789.559 kb on - strand, within ABID97_RS18320 at 3789.559 kb on - strand, within ABID97_RS18320 at 3789.702 kb on + strand, within ABID97_RS18320 at 3789.702 kb on + strand, within ABID97_RS18320 at 3789.863 kb on - strand, within ABID97_RS18320 at 3789.863 kb on - strand, within ABID97_RS18320 at 3790.055 kb on + strand, within ABID97_RS18320 at 3790.056 kb on - strand, within ABID97_RS18320 at 3790.252 kb on - strand, within ABID97_RS18320 at 3790.277 kb on + strand, within ABID97_RS18320 at 3790.278 kb on - strand, within ABID97_RS18320 at 3790.278 kb on - strand, within ABID97_RS18320 at 3790.313 kb on + strand, within ABID97_RS18320 at 3790.335 kb on + strand, within ABID97_RS18320 at 3790.335 kb on + strand, within ABID97_RS18320 at 3790.403 kb on + strand at 3790.460 kb on + strand at 3790.460 kb on + strand at 3790.461 kb on - strand at 3790.546 kb on + strand at 3790.689 kb on + strand, within ABID97_RS18325 at 3790.690 kb on - strand, within ABID97_RS18325 at 3790.985 kb on - strand at 3791.115 kb on + strand, within ABID97_RS18330 at 3791.116 kb on - strand, within ABID97_RS18330 at 3791.214 kb on + strand, within ABID97_RS18330 at 3791.214 kb on + strand, within ABID97_RS18330 at 3791.389 kb on + strand, within ABID97_RS18330 at 3791.389 kb on + strand, within ABID97_RS18330
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 3,788,547 + +0.3 3,788,548 - -0.4 3,788,728 + +0.1 3,788,728 + -0.2 3,788,729 - -0.1 3,788,729 - +0.2 3,788,822 - -0.3 3,788,822 - +0.3 3,788,917 - +1.3 3,788,923 + +1.3 3,789,009 + -0.4 3,789,010 - +1.1 3,789,040 - +0.2 3,789,320 + +0.3 3,789,403 - -0.1 3,789,408 - +0.4 3,789,437 + ABID97_RS18320 0.10 -2.1 3,789,437 + ABID97_RS18320 0.10 -0.7 3,789,468 - ABID97_RS18320 0.13 -0.3 3,789,468 - ABID97_RS18320 0.13 +0.1 3,789,559 - ABID97_RS18320 0.21 -0.2 3,789,559 - ABID97_RS18320 0.21 -0.4 3,789,702 + ABID97_RS18320 0.33 -0.1 3,789,702 + ABID97_RS18320 0.33 -0.8 3,789,863 - ABID97_RS18320 0.47 +0.0 3,789,863 - ABID97_RS18320 0.47 +0.3 3,790,055 + ABID97_RS18320 0.64 -0.3 3,790,056 - ABID97_RS18320 0.64 -0.3 3,790,252 - ABID97_RS18320 0.81 -0.3 3,790,277 + ABID97_RS18320 0.83 -0.3 3,790,278 - ABID97_RS18320 0.83 -1.9 3,790,278 - ABID97_RS18320 0.83 -0.1 3,790,313 + ABID97_RS18320 0.86 -0.6 3,790,335 + ABID97_RS18320 0.88 -0.1 3,790,335 + ABID97_RS18320 0.88 -0.1 3,790,403 + +1.5 3,790,460 + +1.5 3,790,460 + -0.1 3,790,461 - +0.2 3,790,546 + -0.0 3,790,689 + ABID97_RS18325 0.28 -0.6 3,790,690 - ABID97_RS18325 0.28 +0.8 3,790,985 - -0.2 3,791,115 + ABID97_RS18330 0.27 -0.1 3,791,116 - ABID97_RS18330 0.27 -0.4 3,791,214 + ABID97_RS18330 0.47 +0.0 3,791,214 + ABID97_RS18330 0.47 -0.2 3,791,389 + ABID97_RS18330 0.82 +0.1 3,791,389 + ABID97_RS18330 0.82 -0.1
Or see this region's nucleotide sequence