Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15920 and ABID97_RS15925 are separated by 59 nucleotides ABID97_RS15925 and ABID97_RS15930 are separated by 120 nucleotides ABID97_RS15930 and ABID97_RS15935 are separated by 64 nucleotides ABID97_RS15935 and ABID97_RS15940 are separated by 11 nucleotides ABID97_RS15940 and ABID97_RS15945 are separated by 4 nucleotides
ABID97_RS15920: ABID97_RS15920 - GIY-YIG nuclease family protein, at 3,299,201 to 3,299,563
_RS15920
ABID97_RS15925: ABID97_RS15925 - hypothetical protein, at 3,299,623 to 3,300,153
_RS15925
ABID97_RS15930: ABID97_RS15930 - Tex family protein, at 3,300,274 to 3,302,649
_RS15930
ABID97_RS15935: ABID97_RS15935 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,302,714 to 3,302,971
_RS15935
ABID97_RS15940: ABID97_RS15940 - type II toxin-antitoxin system VapC family toxin, at 3,302,983 to 3,303,396
_RS15940
ABID97_RS15945: ABID97_RS15945 - patatin-like phospholipase family protein, at 3,303,401 to 3,304,474
_RS15945
Position (kb)
3300
3301
3302
3303 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3299.457 kb on + strand, within ABID97_RS15920 at 3299.457 kb on + strand, within ABID97_RS15920 at 3299.457 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.521 kb on - strand, within ABID97_RS15920 at 3299.616 kb on + strand at 3300.218 kb on + strand at 3300.218 kb on + strand at 3300.577 kb on + strand, within ABID97_RS15930 at 3300.577 kb on + strand, within ABID97_RS15930 at 3300.577 kb on + strand, within ABID97_RS15930 at 3300.578 kb on - strand, within ABID97_RS15930 at 3300.926 kb on - strand, within ABID97_RS15930 at 3300.926 kb on - strand, within ABID97_RS15930 at 3302.647 kb on + strand at 3302.987 kb on - strand at 3303.196 kb on + strand, within ABID97_RS15940 at 3303.196 kb on + strand, within ABID97_RS15940 at 3303.197 kb on - strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.272 kb on - strand, within ABID97_RS15940 at 3303.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 3,299,457 + ABID97_RS15920 0.71 +0.3 3,299,457 + ABID97_RS15920 0.71 +0.5 3,299,457 + ABID97_RS15920 0.71 +0.4 3,299,520 + ABID97_RS15920 0.88 -0.8 3,299,520 + ABID97_RS15920 0.88 +0.3 3,299,520 + ABID97_RS15920 0.88 -0.4 3,299,520 + ABID97_RS15920 0.88 +2.3 3,299,521 - ABID97_RS15920 0.88 +0.7 3,299,616 + +0.2 3,300,218 + -0.0 3,300,218 + +0.3 3,300,577 + ABID97_RS15930 0.13 -1.3 3,300,577 + ABID97_RS15930 0.13 -0.2 3,300,577 + ABID97_RS15930 0.13 -0.3 3,300,578 - ABID97_RS15930 0.13 -2.0 3,300,926 - ABID97_RS15930 0.27 -0.2 3,300,926 - ABID97_RS15930 0.27 -0.5 3,302,647 + -0.2 3,302,987 - +2.7 3,303,196 + ABID97_RS15940 0.51 -0.4 3,303,196 + ABID97_RS15940 0.51 +0.4 3,303,197 - ABID97_RS15940 0.52 -1.4 3,303,271 + ABID97_RS15940 0.70 +0.4 3,303,271 + ABID97_RS15940 0.70 +1.8 3,303,271 + ABID97_RS15940 0.70 +0.3 3,303,272 - ABID97_RS15940 0.70 -1.2 3,303,419 + -0.5
Or see this region's nucleotide sequence