Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13385

Experiment: NP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13380 and ABID97_RS13385 are separated by 19 nucleotidesABID97_RS13385 and ABID97_RS13390 are separated by 11 nucleotides ABID97_RS13380: ABID97_RS13380 - NAD(P)-binding domain-containing protein, at 2,786,492 to 2,787,508 _RS13380 ABID97_RS13385: ABID97_RS13385 - dihydrodipicolinate synthase family protein, at 2,787,528 to 2,788,547 _RS13385 ABID97_RS13390: ABID97_RS13390 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,788,559 to 2,790,034 _RS13390 Position (kb) 2787 2788 2789Strain fitness (log2 ratio) -1 0 1at 2787.537 kb on + strandat 2787.538 kb on - strandat 2787.682 kb on - strand, within ABID97_RS13385at 2787.918 kb on + strand, within ABID97_RS13385at 2787.919 kb on - strand, within ABID97_RS13385at 2788.230 kb on + strand, within ABID97_RS13385at 2788.231 kb on - strand, within ABID97_RS13385at 2788.522 kb on - strandat 2788.646 kb on + strandat 2788.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NP
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2,787,537 + -0.1
2,787,538 - -0.1
2,787,682 - ABID97_RS13385 0.15 -0.4
2,787,918 + ABID97_RS13385 0.38 +0.3
2,787,919 - ABID97_RS13385 0.38 -1.3
2,788,230 + ABID97_RS13385 0.69 -0.4
2,788,231 - ABID97_RS13385 0.69 -0.7
2,788,522 - +0.3
2,788,646 + -0.8
2,788,647 - -0.7

Or see this region's nucleotide sequence