Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11670

Experiment: NP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11660 and ABID97_RS11665 are separated by 24 nucleotidesABID97_RS11665 and ABID97_RS11670 overlap by 8 nucleotidesABID97_RS11670 and ABID97_RS11675 are separated by 8 nucleotidesABID97_RS11675 and ABID97_RS11680 overlap by 101 nucleotides ABID97_RS11660: ABID97_RS11660 - ABC transporter substrate-binding protein, at 2,408,903 to 2,410,468 _RS11660 ABID97_RS11665: ABID97_RS11665 - ABC transporter permease, at 2,410,493 to 2,411,440 _RS11665 ABID97_RS11670: ABID97_RS11670 - ABC transporter permease, at 2,411,433 to 2,412,329 _RS11670 ABID97_RS11675: ABID97_RS11675 - ABC transporter ATP-binding protein, at 2,412,338 to 2,413,291 _RS11675 ABID97_RS11680: ABID97_RS11680 - ATP-binding cassette domain-containing protein, at 2,413,191 to 2,413,991 _RS11680 Position (kb) 2411 2412 2413Strain fitness (log2 ratio) -1 0 1at 2410.506 kb on - strandat 2410.688 kb on + strand, within ABID97_RS11665at 2411.129 kb on + strand, within ABID97_RS11665at 2411.129 kb on + strand, within ABID97_RS11665at 2411.205 kb on + strand, within ABID97_RS11665at 2411.241 kb on - strand, within ABID97_RS11665at 2411.399 kb on - strandat 2411.441 kb on + strandat 2411.441 kb on + strandat 2412.045 kb on + strand, within ABID97_RS11670at 2412.046 kb on - strand, within ABID97_RS11670at 2412.565 kb on - strand, within ABID97_RS11675at 2412.638 kb on - strand, within ABID97_RS11675at 2412.965 kb on + strand, within ABID97_RS11675at 2412.965 kb on + strand, within ABID97_RS11675at 2412.965 kb on + strand, within ABID97_RS11675at 2412.966 kb on - strand, within ABID97_RS11675at 2413.197 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NP
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2,410,506 - -0.1
2,410,688 + ABID97_RS11665 0.21 -0.7
2,411,129 + ABID97_RS11665 0.67 -1.0
2,411,129 + ABID97_RS11665 0.67 -0.4
2,411,205 + ABID97_RS11665 0.75 +0.6
2,411,241 - ABID97_RS11665 0.79 -0.8
2,411,399 - +0.5
2,411,441 + +1.6
2,411,441 + -1.2
2,412,045 + ABID97_RS11670 0.68 -0.1
2,412,046 - ABID97_RS11670 0.68 -0.0
2,412,565 - ABID97_RS11675 0.24 +0.2
2,412,638 - ABID97_RS11675 0.31 +0.5
2,412,965 + ABID97_RS11675 0.66 +0.3
2,412,965 + ABID97_RS11675 0.66 -0.2
2,412,965 + ABID97_RS11675 0.66 -0.3
2,412,966 - ABID97_RS11675 0.66 +0.0
2,413,197 + -0.3

Or see this region's nucleotide sequence