Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11340

Experiment: NP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11335 and ABID97_RS11340 are separated by 5 nucleotidesABID97_RS11340 and ABID97_RS11345 are separated by 7 nucleotides ABID97_RS11335: ABID97_RS11335 - thiolase family protein, at 2,339,414 to 2,340,580 _RS11335 ABID97_RS11340: ABID97_RS11340 - OB-fold domain-containing protein, at 2,340,586 to 2,341,023 _RS11340 ABID97_RS11345: ABID97_RS11345 - class I adenylate-forming enzyme family protein, at 2,341,031 to 2,342,575 _RS11345 Position (kb) 2340 2341 2342Strain fitness (log2 ratio) -1 0 1at 2339.609 kb on + strand, within ABID97_RS11335at 2339.610 kb on - strand, within ABID97_RS11335at 2339.651 kb on + strand, within ABID97_RS11335at 2340.534 kb on - strandat 2340.652 kb on + strand, within ABID97_RS11340at 2340.653 kb on - strand, within ABID97_RS11340at 2340.653 kb on - strand, within ABID97_RS11340at 2340.709 kb on + strand, within ABID97_RS11340at 2340.710 kb on - strand, within ABID97_RS11340at 2340.815 kb on - strand, within ABID97_RS11340at 2341.000 kb on + strandat 2341.235 kb on + strand, within ABID97_RS11345at 2341.235 kb on + strand, within ABID97_RS11345at 2341.304 kb on + strand, within ABID97_RS11345at 2341.446 kb on + strand, within ABID97_RS11345at 2341.447 kb on - strand, within ABID97_RS11345at 2341.514 kb on + strand, within ABID97_RS11345

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Per-strain Table

Position Strand Gene LocusTag Fraction NP
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2,339,609 + ABID97_RS11335 0.17 +0.5
2,339,610 - ABID97_RS11335 0.17 -0.1
2,339,651 + ABID97_RS11335 0.20 -0.0
2,340,534 - +0.8
2,340,652 + ABID97_RS11340 0.15 +0.7
2,340,653 - ABID97_RS11340 0.15 +0.0
2,340,653 - ABID97_RS11340 0.15 +1.2
2,340,709 + ABID97_RS11340 0.28 -1.1
2,340,710 - ABID97_RS11340 0.28 +0.8
2,340,815 - ABID97_RS11340 0.52 +0.2
2,341,000 + +0.2
2,341,235 + ABID97_RS11345 0.13 +0.4
2,341,235 + ABID97_RS11345 0.13 -0.2
2,341,304 + ABID97_RS11345 0.18 +0.1
2,341,446 + ABID97_RS11345 0.27 +0.3
2,341,447 - ABID97_RS11345 0.27 +1.1
2,341,514 + ABID97_RS11345 0.31 +0.2

Or see this region's nucleotide sequence