Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11270 and ABID97_RS11275 are separated by 201 nucleotides ABID97_RS11275 and ABID97_RS11280 are separated by 52 nucleotides ABID97_RS11280 and ABID97_RS11285 overlap by 58 nucleotides
ABID97_RS11270: ABID97_RS11270 - AlpA family transcriptional regulator, at 2,329,697 to 2,330,035
_RS11270
ABID97_RS11275: ABID97_RS11275 - hypothetical protein, at 2,330,237 to 2,330,677
_RS11275
ABID97_RS11280: ABID97_RS11280 - hypothetical protein, at 2,330,730 to 2,331,167
_RS11280
ABID97_RS11285: ABID97_RS11285 - hypothetical protein, at 2,331,110 to 2,331,967
_RS11285
Position (kb)
2330
2331
2332 Strain fitness (log2 ratio)
-1
0
1 at 2330.092 kb on - strand at 2330.092 kb on - strand at 2330.128 kb on + strand at 2330.129 kb on - strand at 2330.408 kb on - strand, within ABID97_RS11275 at 2330.446 kb on - strand at 2330.535 kb on + strand, within ABID97_RS11275 at 2330.536 kb on - strand, within ABID97_RS11275 at 2330.841 kb on - strand, within ABID97_RS11280 at 2330.841 kb on - strand, within ABID97_RS11280 at 2331.228 kb on + strand, within ABID97_RS11285 at 2331.646 kb on + strand, within ABID97_RS11285 at 2331.647 kb on - strand, within ABID97_RS11285 at 2331.676 kb on + strand, within ABID97_RS11285 at 2331.862 kb on - strand, within ABID97_RS11285
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 2,330,092 - +0.8 2,330,092 - +0.5 2,330,128 + -0.1 2,330,129 - +0.0 2,330,408 - ABID97_RS11275 0.39 -0.1 2,330,446 - +1.6 2,330,535 + ABID97_RS11275 0.68 -0.3 2,330,536 - ABID97_RS11275 0.68 +0.9 2,330,841 - ABID97_RS11280 0.25 +0.6 2,330,841 - ABID97_RS11280 0.25 +0.5 2,331,228 + ABID97_RS11285 0.14 +0.4 2,331,646 + ABID97_RS11285 0.62 +0.3 2,331,647 - ABID97_RS11285 0.63 -0.1 2,331,676 + ABID97_RS11285 0.66 +0.2 2,331,862 - ABID97_RS11285 0.88 -0.0
Or see this region's nucleotide sequence