Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10000 and ABID97_RS10005 are separated by 76 nucleotides ABID97_RS10005 and ABID97_RS10010 are separated by 197 nucleotides ABID97_RS10010 and ABID97_RS10015 overlap by 4 nucleotides
ABID97_RS10000: ABID97_RS10000 - cation diffusion facilitator family transporter, at 2,078,275 to 2,079,219
_RS10000
ABID97_RS10005: ABID97_RS10005 - hypothetical protein, at 2,079,296 to 2,079,481
_RS10005
ABID97_RS10010: ABID97_RS10010 - ATPase domain-containing protein, at 2,079,679 to 2,081,178
_RS10010
ABID97_RS10015: ABID97_RS10015 - ATP-binding protein, at 2,081,175 to 2,082,725
_RS10015
Position (kb)
2079
2080
2081
2082 Strain fitness (log2 ratio)
-1
0
1 at 2078.744 kb on - strand, within ABID97_RS10000 at 2078.744 kb on - strand, within ABID97_RS10000 at 2078.806 kb on + strand, within ABID97_RS10000 at 2078.806 kb on + strand, within ABID97_RS10000 at 2078.806 kb on + strand, within ABID97_RS10000 at 2078.807 kb on - strand, within ABID97_RS10000 at 2078.807 kb on - strand, within ABID97_RS10000 at 2079.017 kb on - strand, within ABID97_RS10000 at 2079.017 kb on - strand, within ABID97_RS10000 at 2079.017 kb on - strand, within ABID97_RS10000 at 2079.017 kb on - strand, within ABID97_RS10000 at 2079.534 kb on + strand at 2079.664 kb on - strand at 2079.788 kb on - strand at 2079.877 kb on + strand, within ABID97_RS10010 at 2080.003 kb on + strand, within ABID97_RS10010 at 2080.003 kb on + strand, within ABID97_RS10010 at 2080.003 kb on + strand, within ABID97_RS10010 at 2080.004 kb on - strand, within ABID97_RS10010 at 2080.004 kb on - strand, within ABID97_RS10010 at 2080.004 kb on - strand, within ABID97_RS10010 at 2080.004 kb on - strand, within ABID97_RS10010 at 2080.294 kb on + strand, within ABID97_RS10010 at 2080.330 kb on + strand, within ABID97_RS10010 at 2080.367 kb on - strand, within ABID97_RS10010 at 2080.626 kb on + strand, within ABID97_RS10010 at 2080.627 kb on - strand, within ABID97_RS10010 at 2080.627 kb on - strand, within ABID97_RS10010 at 2080.957 kb on + strand, within ABID97_RS10010 at 2080.957 kb on + strand, within ABID97_RS10010 at 2080.957 kb on + strand, within ABID97_RS10010 at 2080.987 kb on + strand, within ABID97_RS10010 at 2080.988 kb on - strand, within ABID97_RS10010 at 2081.581 kb on - strand, within ABID97_RS10015 at 2081.742 kb on + strand, within ABID97_RS10015 at 2081.742 kb on + strand, within ABID97_RS10015 at 2081.745 kb on + strand, within ABID97_RS10015 at 2081.746 kb on - strand, within ABID97_RS10015 at 2082.018 kb on + strand, within ABID97_RS10015 at 2082.019 kb on - strand, within ABID97_RS10015
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 2,078,744 - ABID97_RS10000 0.50 -0.3 2,078,744 - ABID97_RS10000 0.50 +0.3 2,078,806 + ABID97_RS10000 0.56 +0.4 2,078,806 + ABID97_RS10000 0.56 +0.5 2,078,806 + ABID97_RS10000 0.56 -0.3 2,078,807 - ABID97_RS10000 0.56 -0.0 2,078,807 - ABID97_RS10000 0.56 +0.2 2,079,017 - ABID97_RS10000 0.79 +0.3 2,079,017 - ABID97_RS10000 0.79 -0.3 2,079,017 - ABID97_RS10000 0.79 +0.3 2,079,017 - ABID97_RS10000 0.79 -0.6 2,079,534 + +0.1 2,079,664 - -0.1 2,079,788 - -0.0 2,079,877 + ABID97_RS10010 0.13 +0.3 2,080,003 + ABID97_RS10010 0.22 -0.4 2,080,003 + ABID97_RS10010 0.22 +0.4 2,080,003 + ABID97_RS10010 0.22 +0.0 2,080,004 - ABID97_RS10010 0.22 +0.2 2,080,004 - ABID97_RS10010 0.22 +1.2 2,080,004 - ABID97_RS10010 0.22 +1.0 2,080,004 - ABID97_RS10010 0.22 -0.2 2,080,294 + ABID97_RS10010 0.41 -0.4 2,080,330 + ABID97_RS10010 0.43 -0.2 2,080,367 - ABID97_RS10010 0.46 -0.2 2,080,626 + ABID97_RS10010 0.63 +0.0 2,080,627 - ABID97_RS10010 0.63 +0.4 2,080,627 - ABID97_RS10010 0.63 +0.1 2,080,957 + ABID97_RS10010 0.85 +0.7 2,080,957 + ABID97_RS10010 0.85 +0.0 2,080,957 + ABID97_RS10010 0.85 -0.9 2,080,987 + ABID97_RS10010 0.87 -0.0 2,080,988 - ABID97_RS10010 0.87 +0.4 2,081,581 - ABID97_RS10015 0.26 -0.2 2,081,742 + ABID97_RS10015 0.37 -1.0 2,081,742 + ABID97_RS10015 0.37 +0.2 2,081,745 + ABID97_RS10015 0.37 -0.8 2,081,746 - ABID97_RS10015 0.37 +0.4 2,082,018 + ABID97_RS10015 0.54 +0.1 2,082,019 - ABID97_RS10015 0.54 -0.1
Or see this region's nucleotide sequence