Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09335 and ABID97_RS09340 are separated by 25 nucleotides ABID97_RS09340 and ABID97_RS09345 are separated by 7 nucleotides ABID97_RS09345 and ABID97_RS09350 overlap by 4 nucleotides ABID97_RS09350 and ABID97_RS09355 overlap by 4 nucleotides
ABID97_RS09335: ABID97_RS09335 - ABC transporter substrate-binding protein, at 1,963,021 to 1,964,226
_RS09335
ABID97_RS09340: ABID97_RS09340 - branched-chain amino acid ABC transporter permease, at 1,964,252 to 1,965,112
_RS09340
ABID97_RS09345: ABID97_RS09345 - branched-chain amino acid ABC transporter permease, at 1,965,120 to 1,966,082
_RS09345
ABID97_RS09350: ABID97_RS09350 - ABC transporter ATP-binding protein, at 1,966,079 to 1,966,849
_RS09350
ABID97_RS09355: ABID97_RS09355 - ABC transporter ATP-binding protein, at 1,966,846 to 1,967,559
_RS09355
Position (kb) 1965
1966
1967 Strain fitness (log2 ratio) -1
0
1 at 1964.158 kb on + strand at 1964.262 kb on - strand at 1964.304 kb on - strand at 1964.378 kb on + strand, within ABID97_RS09340 at 1964.378 kb on + strand at 1964.660 kb on + strand, within ABID97_RS09340 at 1965.050 kb on + strand at 1965.306 kb on + strand, within ABID97_RS09345 at 1965.306 kb on + strand, within ABID97_RS09345 at 1965.306 kb on + strand, within ABID97_RS09345 at 1965.306 kb on + strand, within ABID97_RS09345 at 1965.307 kb on - strand, within ABID97_RS09345 at 1965.432 kb on + strand, within ABID97_RS09345 at 1965.472 kb on - strand, within ABID97_RS09345 at 1965.888 kb on + strand, within ABID97_RS09345
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 1,964,158 + -0.1 1,964,262 - -0.1 1,964,304 - -0.7 1,964,378 + ABID97_RS09340 0.15 +0.4 1,964,378 + +1.5 1,964,660 + ABID97_RS09340 0.47 +0.4 1,965,050 + +0.5 1,965,306 + ABID97_RS09345 0.19 -0.5 1,965,306 + ABID97_RS09345 0.19 -0.3 1,965,306 + ABID97_RS09345 0.19 -0.2 1,965,306 + ABID97_RS09345 0.19 -0.5 1,965,307 - ABID97_RS09345 0.19 -0.7 1,965,432 + ABID97_RS09345 0.32 +0.1 1,965,472 - ABID97_RS09345 0.37 +0.2 1,965,888 + ABID97_RS09345 0.80 +0.2
Or see this region's nucleotide sequence