Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08065 and ABID97_RS08070 are separated by 275 nucleotides ABID97_RS08070 and ABID97_RS08075 are separated by 17 nucleotides ABID97_RS08075 and ABID97_RS08080 are separated by 29 nucleotides ABID97_RS08080 and ABID97_RS08085 are separated by 12 nucleotides ABID97_RS08085 and ABID97_RS08090 are separated by 28 nucleotides
ABID97_RS08065: ABID97_RS08065 - penicillin-binding protein 1C, at 1,692,798 to 1,695,065
_RS08065
ABID97_RS08070: ABID97_RS08070 - thrombospondin type 3 repeat-containing protein, at 1,695,341 to 1,695,550
_RS08070
ABID97_RS08075: ABID97_RS08075 - LysE family translocator, at 1,695,568 to 1,696,194
_RS08075
ABID97_RS08080: ABID97_RS08080 - DUF2277 domain-containing protein, at 1,696,224 to 1,696,493
_RS08080
ABID97_RS08085: ABID97_RS08085 - GNAT family N-acetyltransferase, at 1,696,506 to 1,696,931
_RS08085
ABID97_RS08090: ABID97_RS08090 - tRNA 2-selenouridine(34) synthase MnmH, at 1,696,960 to 1,698,033
_RS08090
Position (kb)
1695
1696
1697 Strain fitness (log2 ratio)
-1
0
1 at 1694.786 kb on - strand, within ABID97_RS08065 at 1694.786 kb on - strand, within ABID97_RS08065 at 1694.786 kb on - strand, within ABID97_RS08065 at 1694.997 kb on + strand at 1695.144 kb on + strand at 1695.145 kb on - strand at 1695.145 kb on - strand at 1695.407 kb on + strand, within ABID97_RS08070 at 1695.408 kb on - strand, within ABID97_RS08070 at 1695.437 kb on + strand, within ABID97_RS08070 at 1695.437 kb on + strand, within ABID97_RS08070 at 1695.437 kb on + strand, within ABID97_RS08070 at 1695.437 kb on + strand, within ABID97_RS08070 at 1695.438 kb on - strand, within ABID97_RS08070 at 1695.438 kb on - strand, within ABID97_RS08070 at 1695.441 kb on - strand, within ABID97_RS08070 at 1695.941 kb on + strand, within ABID97_RS08075 at 1695.942 kb on - strand, within ABID97_RS08075 at 1695.942 kb on - strand, within ABID97_RS08075 at 1695.942 kb on - strand, within ABID97_RS08075 at 1695.942 kb on - strand, within ABID97_RS08075 at 1695.942 kb on - strand, within ABID97_RS08075 at 1695.950 kb on + strand, within ABID97_RS08075 at 1696.106 kb on + strand, within ABID97_RS08075 at 1696.106 kb on + strand, within ABID97_RS08075 at 1696.106 kb on + strand, within ABID97_RS08075 at 1696.107 kb on - strand, within ABID97_RS08075 at 1696.468 kb on + strand at 1696.468 kb on + strand at 1696.469 kb on - strand at 1696.729 kb on + strand, within ABID97_RS08085 at 1696.729 kb on + strand, within ABID97_RS08085 at 1696.729 kb on + strand, within ABID97_RS08085 at 1696.729 kb on + strand, within ABID97_RS08085 at 1696.730 kb on - strand, within ABID97_RS08085 at 1696.730 kb on - strand, within ABID97_RS08085 at 1696.730 kb on - strand, within ABID97_RS08085 at 1696.871 kb on - strand, within ABID97_RS08085 at 1696.871 kb on - strand, within ABID97_RS08085
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 1,694,786 - ABID97_RS08065 0.88 -0.3 1,694,786 - ABID97_RS08065 0.88 +0.5 1,694,786 - ABID97_RS08065 0.88 +0.2 1,694,997 + +0.3 1,695,144 + +0.2 1,695,145 - -0.0 1,695,145 - +0.2 1,695,407 + ABID97_RS08070 0.31 -0.2 1,695,408 - ABID97_RS08070 0.32 +0.0 1,695,437 + ABID97_RS08070 0.46 +1.0 1,695,437 + ABID97_RS08070 0.46 +0.2 1,695,437 + ABID97_RS08070 0.46 -0.2 1,695,437 + ABID97_RS08070 0.46 -0.2 1,695,438 - ABID97_RS08070 0.46 +0.3 1,695,438 - ABID97_RS08070 0.46 +1.5 1,695,441 - ABID97_RS08070 0.48 +0.3 1,695,941 + ABID97_RS08075 0.59 +0.1 1,695,942 - ABID97_RS08075 0.60 +0.5 1,695,942 - ABID97_RS08075 0.60 +0.3 1,695,942 - ABID97_RS08075 0.60 +0.4 1,695,942 - ABID97_RS08075 0.60 -0.3 1,695,942 - ABID97_RS08075 0.60 +0.1 1,695,950 + ABID97_RS08075 0.61 -0.1 1,696,106 + ABID97_RS08075 0.86 -0.9 1,696,106 + ABID97_RS08075 0.86 +1.0 1,696,106 + ABID97_RS08075 0.86 +1.1 1,696,107 - ABID97_RS08075 0.86 +0.8 1,696,468 + -0.0 1,696,468 + -0.4 1,696,469 - +0.3 1,696,729 + ABID97_RS08085 0.52 -0.3 1,696,729 + ABID97_RS08085 0.52 +0.6 1,696,729 + ABID97_RS08085 0.52 -0.3 1,696,729 + ABID97_RS08085 0.52 -0.7 1,696,730 - ABID97_RS08085 0.53 +0.1 1,696,730 - ABID97_RS08085 0.53 -0.1 1,696,730 - ABID97_RS08085 0.53 -0.0 1,696,871 - ABID97_RS08085 0.86 -0.5 1,696,871 - ABID97_RS08085 0.86 +0.4
Or see this region's nucleotide sequence