Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07415 and ABID97_RS07420 are separated by 125 nucleotides ABID97_RS07420 and ABID97_RS07425 are separated by 20 nucleotides ABID97_RS07425 and ABID97_RS07430 overlap by 4 nucleotides
ABID97_RS07415: ABID97_RS07415 - quinolinate synthase NadA, at 1,566,406 to 1,567,524
_RS07415
ABID97_RS07420: ABID97_RS07420 - 6-carboxytetrahydropterin synthase, at 1,567,650 to 1,568,012
_RS07420
ABID97_RS07425: ABID97_RS07425 - 7-carboxy-7-deazaguanine synthase, at 1,568,033 to 1,568,671
_RS07425
ABID97_RS07430: ABID97_RS07430 - pantoate--beta-alanine ligase, at 1,568,668 to 1,569,516
_RS07430
Position (kb) 1567
1568
1569 Strain fitness (log2 ratio) -1
0
1
2 at 1566.859 kb on + strand, within ABID97_RS07415 at 1566.860 kb on - strand, within ABID97_RS07415 at 1566.860 kb on - strand, within ABID97_RS07415 at 1566.994 kb on + strand, within ABID97_RS07415 at 1566.994 kb on + strand, within ABID97_RS07415 at 1566.994 kb on + strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1567.912 kb on + strand, within ABID97_RS07420 at 1567.912 kb on + strand, within ABID97_RS07420 at 1567.913 kb on - strand, within ABID97_RS07420 at 1567.913 kb on - strand, within ABID97_RS07420 at 1568.643 kb on + strand at 1568.643 kb on + strand at 1568.664 kb on + strand at 1568.664 kb on + strand at 1568.664 kb on + strand at 1568.665 kb on - strand at 1568.665 kb on - strand at 1568.665 kb on - strand at 1568.808 kb on - strand, within ABID97_RS07430 at 1568.887 kb on + strand, within ABID97_RS07430 at 1568.887 kb on + strand, within ABID97_RS07430 at 1568.888 kb on - strand, within ABID97_RS07430 at 1568.888 kb on - strand, within ABID97_RS07430 at 1568.888 kb on - strand, within ABID97_RS07430 at 1568.888 kb on - strand, within ABID97_RS07430 at 1568.888 kb on - strand, within ABID97_RS07430 at 1568.957 kb on + strand, within ABID97_RS07430
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 1,566,859 + ABID97_RS07415 0.40 -0.0 1,566,860 - ABID97_RS07415 0.41 +0.6 1,566,860 - ABID97_RS07415 0.41 -0.3 1,566,994 + ABID97_RS07415 0.53 +0.2 1,566,994 + ABID97_RS07415 0.53 -1.4 1,566,994 + ABID97_RS07415 0.53 +0.1 1,566,995 - ABID97_RS07415 0.53 +0.1 1,566,995 - ABID97_RS07415 0.53 +0.2 1,566,995 - ABID97_RS07415 0.53 -1.0 1,566,995 - ABID97_RS07415 0.53 -0.0 1,566,995 - ABID97_RS07415 0.53 -0.8 1,567,912 + ABID97_RS07420 0.72 +0.6 1,567,912 + ABID97_RS07420 0.72 -0.8 1,567,913 - ABID97_RS07420 0.72 -0.8 1,567,913 - ABID97_RS07420 0.72 -0.1 1,568,643 + +0.7 1,568,643 + +0.2 1,568,664 + +0.6 1,568,664 + -0.8 1,568,664 + +0.4 1,568,665 - -0.6 1,568,665 - -1.3 1,568,665 - -0.3 1,568,808 - ABID97_RS07430 0.16 +2.0 1,568,887 + ABID97_RS07430 0.26 -0.6 1,568,887 + ABID97_RS07430 0.26 -0.1 1,568,888 - ABID97_RS07430 0.26 -0.1 1,568,888 - ABID97_RS07430 0.26 -0.0 1,568,888 - ABID97_RS07430 0.26 -0.5 1,568,888 - ABID97_RS07430 0.26 +0.0 1,568,888 - ABID97_RS07430 0.26 -0.4 1,568,957 + ABID97_RS07430 0.34 -0.3
Or see this region's nucleotide sequence