Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05590

Experiment: NP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05585 and ABID97_RS05590 are separated by 13 nucleotidesABID97_RS05590 and ABID97_RS05595 are separated by 5 nucleotidesABID97_RS05595 and ABID97_RS05600 are separated by 10 nucleotides ABID97_RS05585: ABID97_RS05585 - threonine dehydratase, at 1,175,366 to 1,176,343 _RS05585 ABID97_RS05590: ABID97_RS05590 - LysE family translocator, at 1,176,357 to 1,176,989 _RS05590 ABID97_RS05595: ABID97_RS05595 - VOC family protein, at 1,176,995 to 1,177,687 _RS05595 ABID97_RS05600: ABID97_RS05600 - PhzF family phenazine biosynthesis protein, at 1,177,698 to 1,178,624 _RS05600 Position (kb) 1176 1177Strain fitness (log2 ratio) -1 0 1 2at 1175.367 kb on + strandat 1175.710 kb on - strand, within ABID97_RS05585at 1175.865 kb on + strand, within ABID97_RS05585at 1175.865 kb on + strand, within ABID97_RS05585at 1175.865 kb on + strand, within ABID97_RS05585at 1175.865 kb on + strand, within ABID97_RS05585at 1175.866 kb on - strand, within ABID97_RS05585at 1176.168 kb on + strand, within ABID97_RS05585at 1176.169 kb on - strand, within ABID97_RS05585at 1176.169 kb on - strand, within ABID97_RS05585at 1176.359 kb on - strandat 1176.359 kb on - strandat 1176.418 kb on + strandat 1176.419 kb on - strandat 1176.419 kb on - strandat 1176.598 kb on + strand, within ABID97_RS05590at 1176.598 kb on + strand, within ABID97_RS05590at 1176.598 kb on + strand, within ABID97_RS05590at 1176.598 kb on + strand, within ABID97_RS05590at 1176.598 kb on + strand, within ABID97_RS05590at 1176.743 kb on - strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.910 kb on + strand, within ABID97_RS05590at 1176.911 kb on - strand, within ABID97_RS05590at 1176.911 kb on - strand, within ABID97_RS05590at 1176.911 kb on - strand, within ABID97_RS05590at 1176.911 kb on - strand, within ABID97_RS05590at 1177.231 kb on - strand, within ABID97_RS05595at 1177.231 kb on - strand, within ABID97_RS05595at 1177.518 kb on + strand, within ABID97_RS05595at 1177.519 kb on - strand, within ABID97_RS05595at 1177.519 kb on - strand, within ABID97_RS05595at 1177.699 kb on + strandat 1177.823 kb on - strand, within ABID97_RS05600

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Per-strain Table

Position Strand Gene LocusTag Fraction NP
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1,175,367 + -0.3
1,175,710 - ABID97_RS05585 0.35 +0.8
1,175,865 + ABID97_RS05585 0.51 -0.1
1,175,865 + ABID97_RS05585 0.51 -0.1
1,175,865 + ABID97_RS05585 0.51 -0.2
1,175,865 + ABID97_RS05585 0.51 +0.3
1,175,866 - ABID97_RS05585 0.51 -0.0
1,176,168 + ABID97_RS05585 0.82 +0.9
1,176,169 - ABID97_RS05585 0.82 +0.8
1,176,169 - ABID97_RS05585 0.82 +0.2
1,176,359 - -0.1
1,176,359 - -0.3
1,176,418 + +0.3
1,176,419 - +0.1
1,176,419 - +0.0
1,176,598 + ABID97_RS05590 0.38 +2.2
1,176,598 + ABID97_RS05590 0.38 -0.2
1,176,598 + ABID97_RS05590 0.38 +0.0
1,176,598 + ABID97_RS05590 0.38 -0.1
1,176,598 + ABID97_RS05590 0.38 -0.0
1,176,743 - ABID97_RS05590 0.61 +0.7
1,176,910 + ABID97_RS05590 0.87 +0.2
1,176,910 + ABID97_RS05590 0.87 +0.0
1,176,910 + ABID97_RS05590 0.87 -0.0
1,176,910 + ABID97_RS05590 0.87 -0.2
1,176,910 + ABID97_RS05590 0.87 +0.5
1,176,910 + ABID97_RS05590 0.87 +0.2
1,176,910 + ABID97_RS05590 0.87 -0.2
1,176,910 + ABID97_RS05590 0.87 -0.6
1,176,911 - ABID97_RS05590 0.88 +0.1
1,176,911 - ABID97_RS05590 0.88 +0.2
1,176,911 - ABID97_RS05590 0.88 +0.1
1,176,911 - ABID97_RS05590 0.88 -0.2
1,177,231 - ABID97_RS05595 0.34 +0.1
1,177,231 - ABID97_RS05595 0.34 +0.4
1,177,518 + ABID97_RS05595 0.75 +0.0
1,177,519 - ABID97_RS05595 0.76 -0.6
1,177,519 - ABID97_RS05595 0.76 -0.5
1,177,699 + +0.3
1,177,823 - ABID97_RS05600 0.13 +0.1

Or see this region's nucleotide sequence