Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05585 and ABID97_RS05590 are separated by 13 nucleotides ABID97_RS05590 and ABID97_RS05595 are separated by 5 nucleotides ABID97_RS05595 and ABID97_RS05600 are separated by 10 nucleotides
ABID97_RS05585: ABID97_RS05585 - threonine dehydratase, at 1,175,366 to 1,176,343
_RS05585
ABID97_RS05590: ABID97_RS05590 - LysE family translocator, at 1,176,357 to 1,176,989
_RS05590
ABID97_RS05595: ABID97_RS05595 - VOC family protein, at 1,176,995 to 1,177,687
_RS05595
ABID97_RS05600: ABID97_RS05600 - PhzF family phenazine biosynthesis protein, at 1,177,698 to 1,178,624
_RS05600
Position (kb)
1176
1177 Strain fitness (log2 ratio)
-1
0
1
2 at 1175.367 kb on + strand at 1175.710 kb on - strand, within ABID97_RS05585 at 1175.865 kb on + strand, within ABID97_RS05585 at 1175.865 kb on + strand, within ABID97_RS05585 at 1175.865 kb on + strand, within ABID97_RS05585 at 1175.865 kb on + strand, within ABID97_RS05585 at 1175.866 kb on - strand, within ABID97_RS05585 at 1176.168 kb on + strand, within ABID97_RS05585 at 1176.169 kb on - strand, within ABID97_RS05585 at 1176.169 kb on - strand, within ABID97_RS05585 at 1176.359 kb on - strand at 1176.359 kb on - strand at 1176.418 kb on + strand at 1176.419 kb on - strand at 1176.419 kb on - strand at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.743 kb on - strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1177.231 kb on - strand, within ABID97_RS05595 at 1177.231 kb on - strand, within ABID97_RS05595 at 1177.518 kb on + strand, within ABID97_RS05595 at 1177.519 kb on - strand, within ABID97_RS05595 at 1177.519 kb on - strand, within ABID97_RS05595 at 1177.699 kb on + strand at 1177.823 kb on - strand, within ABID97_RS05600
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 1,175,367 + -0.3 1,175,710 - ABID97_RS05585 0.35 +0.8 1,175,865 + ABID97_RS05585 0.51 -0.1 1,175,865 + ABID97_RS05585 0.51 -0.1 1,175,865 + ABID97_RS05585 0.51 -0.2 1,175,865 + ABID97_RS05585 0.51 +0.3 1,175,866 - ABID97_RS05585 0.51 -0.0 1,176,168 + ABID97_RS05585 0.82 +0.9 1,176,169 - ABID97_RS05585 0.82 +0.8 1,176,169 - ABID97_RS05585 0.82 +0.2 1,176,359 - -0.1 1,176,359 - -0.3 1,176,418 + +0.3 1,176,419 - +0.1 1,176,419 - +0.0 1,176,598 + ABID97_RS05590 0.38 +2.2 1,176,598 + ABID97_RS05590 0.38 -0.2 1,176,598 + ABID97_RS05590 0.38 +0.0 1,176,598 + ABID97_RS05590 0.38 -0.1 1,176,598 + ABID97_RS05590 0.38 -0.0 1,176,743 - ABID97_RS05590 0.61 +0.7 1,176,910 + ABID97_RS05590 0.87 +0.2 1,176,910 + ABID97_RS05590 0.87 +0.0 1,176,910 + ABID97_RS05590 0.87 -0.0 1,176,910 + ABID97_RS05590 0.87 -0.2 1,176,910 + ABID97_RS05590 0.87 +0.5 1,176,910 + ABID97_RS05590 0.87 +0.2 1,176,910 + ABID97_RS05590 0.87 -0.2 1,176,910 + ABID97_RS05590 0.87 -0.6 1,176,911 - ABID97_RS05590 0.88 +0.1 1,176,911 - ABID97_RS05590 0.88 +0.2 1,176,911 - ABID97_RS05590 0.88 +0.1 1,176,911 - ABID97_RS05590 0.88 -0.2 1,177,231 - ABID97_RS05595 0.34 +0.1 1,177,231 - ABID97_RS05595 0.34 +0.4 1,177,518 + ABID97_RS05595 0.75 +0.0 1,177,519 - ABID97_RS05595 0.76 -0.6 1,177,519 - ABID97_RS05595 0.76 -0.5 1,177,699 + +0.3 1,177,823 - ABID97_RS05600 0.13 +0.1
Or see this region's nucleotide sequence