Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03345

Experiment: NP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03340 and ABID97_RS03345 are separated by 74 nucleotidesABID97_RS03345 and ABID97_RS03350 are separated by 8 nucleotidesABID97_RS03350 and ABID97_RS03355 are separated by 125 nucleotides ABID97_RS03340: ABID97_RS03340 - nucleoside recognition domain-containing protein, at 675,132 to 676,361 _RS03340 ABID97_RS03345: ABID97_RS03345 - phospholipase D family protein, at 676,436 to 678,019 _RS03345 ABID97_RS03350: ABID97_RS03350 - metallophosphoesterase, at 678,028 to 678,834 _RS03350 ABID97_RS03355: ABID97_RS03355 - hypothetical protein, at 678,960 to 679,133 _RS03355 Position (kb) 676 677 678 679Strain fitness (log2 ratio) -2 -1 0 1 2at 675.520 kb on + strand, within ABID97_RS03340at 675.521 kb on - strand, within ABID97_RS03340at 675.581 kb on - strand, within ABID97_RS03340at 675.581 kb on - strand, within ABID97_RS03340at 675.742 kb on + strand, within ABID97_RS03340at 675.743 kb on - strand, within ABID97_RS03340at 675.743 kb on - strand, within ABID97_RS03340at 675.883 kb on + strand, within ABID97_RS03340at 675.883 kb on + strand, within ABID97_RS03340at 675.884 kb on - strand, within ABID97_RS03340at 676.260 kb on + strandat 676.261 kb on - strandat 676.261 kb on - strandat 676.261 kb on - strandat 676.395 kb on + strandat 676.395 kb on + strandat 676.396 kb on - strandat 676.396 kb on - strandat 676.423 kb on + strandat 676.718 kb on + strand, within ABID97_RS03345at 676.718 kb on + strand, within ABID97_RS03345at 676.718 kb on + strand, within ABID97_RS03345at 676.719 kb on - strand, within ABID97_RS03345at 676.719 kb on - strand, within ABID97_RS03345at 676.719 kb on - strand, within ABID97_RS03345at 676.721 kb on + strand, within ABID97_RS03345at 676.721 kb on + strand, within ABID97_RS03345at 676.722 kb on - strand, within ABID97_RS03345at 676.820 kb on + strand, within ABID97_RS03345at 676.821 kb on - strand, within ABID97_RS03345at 677.039 kb on + strand, within ABID97_RS03345at 677.040 kb on - strand, within ABID97_RS03345at 677.040 kb on - strand, within ABID97_RS03345at 677.385 kb on - strand, within ABID97_RS03345at 677.459 kb on + strand, within ABID97_RS03345at 677.459 kb on + strand, within ABID97_RS03345at 677.459 kb on + strand, within ABID97_RS03345at 677.460 kb on - strand, within ABID97_RS03345at 677.624 kb on + strand, within ABID97_RS03345at 677.625 kb on - strand, within ABID97_RS03345at 677.776 kb on + strand, within ABID97_RS03345at 677.777 kb on - strand, within ABID97_RS03345at 677.823 kb on - strand, within ABID97_RS03345at 677.823 kb on - strand, within ABID97_RS03345at 677.823 kb on - strand, within ABID97_RS03345at 677.910 kb on - strandat 678.017 kb on + strandat 678.128 kb on + strand, within ABID97_RS03350at 678.128 kb on + strand, within ABID97_RS03350at 678.128 kb on + strand, within ABID97_RS03350at 678.129 kb on - strand, within ABID97_RS03350at 678.129 kb on - strand, within ABID97_RS03350at 678.129 kb on - strand, within ABID97_RS03350at 678.231 kb on - strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.405 kb on - strand, within ABID97_RS03350at 678.405 kb on - strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.725 kb on + strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.848 kb on + strandat 678.848 kb on + strandat 678.848 kb on + strandat 678.868 kb on + strandat 678.868 kb on + strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.910 kb on + strandat 678.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NP
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675,520 + ABID97_RS03340 0.32 +0.4
675,521 - ABID97_RS03340 0.32 +0.7
675,581 - ABID97_RS03340 0.37 +0.1
675,581 - ABID97_RS03340 0.37 -0.1
675,742 + ABID97_RS03340 0.50 -0.0
675,743 - ABID97_RS03340 0.50 +0.3
675,743 - ABID97_RS03340 0.50 +0.6
675,883 + ABID97_RS03340 0.61 -0.1
675,883 + ABID97_RS03340 0.61 -0.4
675,884 - ABID97_RS03340 0.61 +0.9
676,260 + -0.2
676,261 - +0.1
676,261 - -0.3
676,261 - -0.5
676,395 + +0.6
676,395 + -0.1
676,396 - -0.5
676,396 - -0.1
676,423 + -2.6
676,718 + ABID97_RS03345 0.18 -0.1
676,718 + ABID97_RS03345 0.18 -0.3
676,718 + ABID97_RS03345 0.18 +0.0
676,719 - ABID97_RS03345 0.18 +1.1
676,719 - ABID97_RS03345 0.18 -0.0
676,719 - ABID97_RS03345 0.18 +0.1
676,721 + ABID97_RS03345 0.18 +0.5
676,721 + ABID97_RS03345 0.18 +1.2
676,722 - ABID97_RS03345 0.18 +0.1
676,820 + ABID97_RS03345 0.24 +0.1
676,821 - ABID97_RS03345 0.24 +0.5
677,039 + ABID97_RS03345 0.38 +0.3
677,040 - ABID97_RS03345 0.38 +0.5
677,040 - ABID97_RS03345 0.38 -0.1
677,385 - ABID97_RS03345 0.60 +0.4
677,459 + ABID97_RS03345 0.65 -0.2
677,459 + ABID97_RS03345 0.65 -0.3
677,459 + ABID97_RS03345 0.65 -0.1
677,460 - ABID97_RS03345 0.65 -0.8
677,624 + ABID97_RS03345 0.75 -0.1
677,625 - ABID97_RS03345 0.75 +0.2
677,776 + ABID97_RS03345 0.85 +0.0
677,777 - ABID97_RS03345 0.85 -0.1
677,823 - ABID97_RS03345 0.88 -0.0
677,823 - ABID97_RS03345 0.88 +0.5
677,823 - ABID97_RS03345 0.88 +0.1
677,910 - -0.1
678,017 + -0.2
678,128 + ABID97_RS03350 0.12 +0.2
678,128 + ABID97_RS03350 0.12 +0.5
678,128 + ABID97_RS03350 0.12 +0.3
678,129 - ABID97_RS03350 0.13 -0.0
678,129 - ABID97_RS03350 0.13 +1.2
678,129 - ABID97_RS03350 0.13 +0.2
678,231 - ABID97_RS03350 0.25 +0.4
678,404 + ABID97_RS03350 0.47 -0.5
678,404 + ABID97_RS03350 0.47 +0.1
678,404 + ABID97_RS03350 0.47 -0.0
678,405 - ABID97_RS03350 0.47 -0.1
678,405 - ABID97_RS03350 0.47 +0.2
678,620 + ABID97_RS03350 0.73 +1.8
678,620 + ABID97_RS03350 0.73 -0.2
678,620 + ABID97_RS03350 0.73 +0.4
678,620 + ABID97_RS03350 0.73 -0.2
678,620 + ABID97_RS03350 0.73 +0.0
678,620 + ABID97_RS03350 0.73 +0.0
678,621 - ABID97_RS03350 0.73 +0.2
678,621 - ABID97_RS03350 0.73 -0.2
678,621 - ABID97_RS03350 0.73 -0.8
678,621 - ABID97_RS03350 0.73 -0.3
678,621 - ABID97_RS03350 0.73 +1.4
678,641 + ABID97_RS03350 0.76 -0.2
678,641 + ABID97_RS03350 0.76 -0.4
678,641 + ABID97_RS03350 0.76 +0.1
678,641 + ABID97_RS03350 0.76 -0.3
678,641 + ABID97_RS03350 0.76 +0.2
678,641 + ABID97_RS03350 0.76 -0.3
678,641 + ABID97_RS03350 0.76 -0.4
678,641 + ABID97_RS03350 0.76 -1.6
678,641 + ABID97_RS03350 0.76 +0.1
678,642 - ABID97_RS03350 0.76 -1.2
678,642 - ABID97_RS03350 0.76 -0.2
678,642 - ABID97_RS03350 0.76 +0.2
678,642 - ABID97_RS03350 0.76 +0.1
678,725 + ABID97_RS03350 0.86 -0.3
678,726 - ABID97_RS03350 0.86 -0.7
678,726 - ABID97_RS03350 0.86 +0.2
678,726 - ABID97_RS03350 0.86 -0.1
678,848 + -0.5
678,848 + -0.5
678,848 + -0.5
678,868 + -0.3
678,868 + -0.2
678,869 - -0.7
678,869 - +0.3
678,869 - +0.8
678,869 - +0.4
678,869 - -0.7
678,910 + +0.2
678,917 - +0.8

Or see this region's nucleotide sequence