Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03100 and ABID97_RS03105 overlap by 4 nucleotides ABID97_RS03105 and ABID97_RS03110 are separated by 200 nucleotides
ABID97_RS03100: ABID97_RS03100 - 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase, at 627,795 to 629,345
_RS03100
ABID97_RS03105: ABID97_RS03105 - DUF4863 family protein, at 629,342 to 629,815
_RS03105
ABID97_RS03110: ABID97_RS03110 - helix-turn-helix transcriptional regulator, at 630,016 to 630,960
_RS03110
Position (kb) 629
630 Strain fitness (log2 ratio) -1
0
1
2 at 629.095 kb on + strand, within ABID97_RS03100 at 629.095 kb on + strand, within ABID97_RS03100 at 629.096 kb on - strand, within ABID97_RS03100 at 629.096 kb on - strand, within ABID97_RS03100 at 629.096 kb on - strand, within ABID97_RS03100 at 629.098 kb on + strand, within ABID97_RS03100 at 629.098 kb on + strand, within ABID97_RS03100 at 629.098 kb on + strand, within ABID97_RS03100 at 629.099 kb on - strand, within ABID97_RS03100 at 629.099 kb on - strand, within ABID97_RS03100 at 629.099 kb on - strand, within ABID97_RS03100 at 629.161 kb on + strand, within ABID97_RS03100 at 629.161 kb on + strand, within ABID97_RS03100 at 629.161 kb on + strand at 629.379 kb on + strand at 629.379 kb on + strand at 629.380 kb on - strand at 629.380 kb on - strand at 629.380 kb on - strand at 629.436 kb on + strand, within ABID97_RS03105 at 629.613 kb on + strand, within ABID97_RS03105 at 629.614 kb on - strand, within ABID97_RS03105 at 629.620 kb on + strand, within ABID97_RS03105 at 629.926 kb on - strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.030 kb on - strand at 630.030 kb on - strand at 630.221 kb on - strand, within ABID97_RS03110 at 630.643 kb on + strand, within ABID97_RS03110 at 630.643 kb on + strand, within ABID97_RS03110 at 630.644 kb on - strand, within ABID97_RS03110 at 630.644 kb on - strand, within ABID97_RS03110 at 630.644 kb on - strand, within ABID97_RS03110
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 629,095 + ABID97_RS03100 0.84 +0.6 629,095 + ABID97_RS03100 0.84 +0.1 629,096 - ABID97_RS03100 0.84 -0.3 629,096 - ABID97_RS03100 0.84 -0.3 629,096 - ABID97_RS03100 0.84 +0.7 629,098 + ABID97_RS03100 0.84 -0.4 629,098 + ABID97_RS03100 0.84 -0.5 629,098 + ABID97_RS03100 0.84 +0.0 629,099 - ABID97_RS03100 0.84 -0.1 629,099 - ABID97_RS03100 0.84 -0.1 629,099 - ABID97_RS03100 0.84 -0.5 629,161 + ABID97_RS03100 0.88 -0.3 629,161 + ABID97_RS03100 0.88 +0.2 629,161 + +1.0 629,379 + +2.6 629,379 + -0.2 629,380 - -0.4 629,380 - +0.0 629,380 - +0.6 629,436 + ABID97_RS03105 0.20 +1.0 629,613 + ABID97_RS03105 0.57 +0.0 629,614 - ABID97_RS03105 0.57 +0.8 629,620 + ABID97_RS03105 0.59 +0.5 629,926 - +0.1 630,029 + +2.2 630,029 + -1.1 630,029 + +0.1 630,029 + +0.4 630,029 + +2.6 630,029 + -0.1 630,029 + +0.5 630,030 - +0.5 630,030 - -0.5 630,221 - ABID97_RS03110 0.22 +0.0 630,643 + ABID97_RS03110 0.66 -0.4 630,643 + ABID97_RS03110 0.66 +0.3 630,644 - ABID97_RS03110 0.66 -0.3 630,644 - ABID97_RS03110 0.66 -0.6 630,644 - ABID97_RS03110 0.66 -1.2
Or see this region's nucleotide sequence