Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01060 and ABID97_RS01065 are separated by 64 nucleotides ABID97_RS01065 and ABID97_RS01070 overlap by 4 nucleotides ABID97_RS01070 and ABID97_RS01075 are separated by 84 nucleotides
ABID97_RS01060: ABID97_RS01060 - SDR family NAD(P)-dependent oxidoreductase, at 213,933 to 214,697
_RS01060
ABID97_RS01065: ABID97_RS01065 - hypothetical protein, at 214,762 to 215,232
_RS01065
ABID97_RS01070: ABID97_RS01070 - Crp/Fnr family transcriptional regulator, at 215,229 to 215,999
_RS01070
ABID97_RS01075: ABID97_RS01075 - AMP-binding protein, at 216,084 to 218,039
_RS01075
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.732 kb on + strand at 215.180 kb on + strand, within ABID97_RS01065 at 215.181 kb on - strand, within ABID97_RS01065 at 215.181 kb on - strand, within ABID97_RS01065 at 215.398 kb on + strand, within ABID97_RS01070 at 215.663 kb on - strand, within ABID97_RS01070 at 216.017 kb on + strand at 216.018 kb on - strand at 216.018 kb on - strand at 216.027 kb on - strand at 216.027 kb on - strand at 216.069 kb on + strand at 216.304 kb on - strand, within ABID97_RS01075 at 216.304 kb on - strand, within ABID97_RS01075 at 216.555 kb on + strand, within ABID97_RS01075 at 216.660 kb on + strand, within ABID97_RS01075 at 216.660 kb on + strand, within ABID97_RS01075 at 216.909 kb on + strand, within ABID97_RS01075 at 216.912 kb on + strand, within ABID97_RS01075
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 214,732 + -0.8 215,180 + ABID97_RS01065 0.89 +0.2 215,181 - ABID97_RS01065 0.89 +0.4 215,181 - ABID97_RS01065 0.89 +0.3 215,398 + ABID97_RS01070 0.22 +0.1 215,663 - ABID97_RS01070 0.56 +1.1 216,017 + -0.3 216,018 - -1.5 216,018 - +0.8 216,027 - +0.2 216,027 - +1.0 216,069 + -1.5 216,304 - ABID97_RS01075 0.11 +0.4 216,304 - ABID97_RS01075 0.11 -2.0 216,555 + ABID97_RS01075 0.24 +0.0 216,660 + ABID97_RS01075 0.29 -0.3 216,660 + ABID97_RS01075 0.29 +1.6 216,909 + ABID97_RS01075 0.42 -0.4 216,912 + ABID97_RS01075 0.42 +1.8
Or see this region's nucleotide sequence