Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_88 and PfGW456L13_89 are separated by 6 nucleotides PfGW456L13_89 and PfGW456L13_90 overlap by 1 nucleotides PfGW456L13_90 and PfGW456L13_91 are separated by 138 nucleotides
PfGW456L13_88 - GCN5-related N-acetyltransferase, at 99,644 to 100,177
_88
PfGW456L13_89 - Tabtoxin resistance protein, at 100,184 to 100,717
_89
PfGW456L13_90 - Urease beta subunit (EC 3.5.1.5), at 100,717 to 101,022
_90
PfGW456L13_91 - Urease alpha subunit (EC 3.5.1.5), at 101,161 to 102,861
_91
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.908 kb on + strand, within PfGW456L13_88 at 99.908 kb on + strand, within PfGW456L13_88 at 99.908 kb on + strand, within PfGW456L13_88 at 99.909 kb on - strand, within PfGW456L13_88 at 99.909 kb on - strand, within PfGW456L13_88 at 100.060 kb on + strand, within PfGW456L13_88 at 100.060 kb on + strand, within PfGW456L13_88 at 100.061 kb on - strand, within PfGW456L13_88 at 100.061 kb on - strand, within PfGW456L13_88 at 100.064 kb on - strand, within PfGW456L13_88 at 100.257 kb on + strand, within PfGW456L13_89 at 100.328 kb on + strand, within PfGW456L13_89 at 100.329 kb on - strand, within PfGW456L13_89 at 100.604 kb on + strand, within PfGW456L13_89 at 100.604 kb on + strand, within PfGW456L13_89 at 100.605 kb on - strand, within PfGW456L13_89 at 100.619 kb on + strand, within PfGW456L13_89 at 100.619 kb on + strand, within PfGW456L13_89 at 100.619 kb on + strand, within PfGW456L13_89 at 100.646 kb on + strand, within PfGW456L13_89 at 100.670 kb on + strand at 100.671 kb on - strand at 100.691 kb on + strand at 100.691 kb on + strand at 100.692 kb on - strand at 100.692 kb on - strand at 100.692 kb on - strand at 100.692 kb on - strand at 100.762 kb on - strand, within PfGW456L13_90 at 101.182 kb on + strand at 101.367 kb on + strand, within PfGW456L13_91 at 101.368 kb on - strand, within PfGW456L13_91 at 101.444 kb on + strand, within PfGW456L13_91 at 101.444 kb on + strand, within PfGW456L13_91 at 101.445 kb on - strand, within PfGW456L13_91 at 101.749 kb on - strand, within PfGW456L13_91 at 101.968 kb on + strand, within PfGW456L13_91 at 101.968 kb on + strand, within PfGW456L13_91 at 101.968 kb on + strand, within PfGW456L13_91 at 101.968 kb on + strand, within PfGW456L13_91 at 101.969 kb on - strand, within PfGW456L13_91 at 101.969 kb on - strand, within PfGW456L13_91 at 101.969 kb on - strand, within PfGW456L13_91
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 99,908 + PfGW456L13_88 0.49 -0.2 99,908 + PfGW456L13_88 0.49 -0.1 99,908 + PfGW456L13_88 0.49 +1.4 99,909 - PfGW456L13_88 0.50 -0.8 99,909 - PfGW456L13_88 0.50 -1.2 100,060 + PfGW456L13_88 0.78 -0.4 100,060 + PfGW456L13_88 0.78 -0.3 100,061 - PfGW456L13_88 0.78 +1.5 100,061 - PfGW456L13_88 0.78 -0.1 100,064 - PfGW456L13_88 0.79 +1.2 100,257 + PfGW456L13_89 0.14 +0.7 100,328 + PfGW456L13_89 0.27 -0.6 100,329 - PfGW456L13_89 0.27 +0.5 100,604 + PfGW456L13_89 0.79 -1.4 100,604 + PfGW456L13_89 0.79 +0.6 100,605 - PfGW456L13_89 0.79 +1.0 100,619 + PfGW456L13_89 0.81 +0.5 100,619 + PfGW456L13_89 0.81 -0.2 100,619 + PfGW456L13_89 0.81 +0.7 100,646 + PfGW456L13_89 0.87 -1.4 100,670 + -0.2 100,671 - +1.0 100,691 + -0.3 100,691 + +0.3 100,692 - +0.0 100,692 - +0.9 100,692 - -0.7 100,692 - -0.9 100,762 - PfGW456L13_90 0.15 +2.1 101,182 + -0.6 101,367 + PfGW456L13_91 0.12 -0.8 101,368 - PfGW456L13_91 0.12 -0.7 101,444 + PfGW456L13_91 0.17 -1.1 101,444 + PfGW456L13_91 0.17 -0.8 101,445 - PfGW456L13_91 0.17 -1.8 101,749 - PfGW456L13_91 0.35 +0.2 101,968 + PfGW456L13_91 0.47 -2.5 101,968 + PfGW456L13_91 0.47 -1.9 101,968 + PfGW456L13_91 0.47 -2.6 101,968 + PfGW456L13_91 0.47 -0.6 101,969 - PfGW456L13_91 0.48 +0.5 101,969 - PfGW456L13_91 0.48 +0.2 101,969 - PfGW456L13_91 0.48 +0.7
Or see this region's nucleotide sequence