Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_651 and PfGW456L13_652 overlap by 4 nucleotides PfGW456L13_652 and PfGW456L13_653 are separated by 22 nucleotides
PfGW456L13_651 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 741,451 to 742,410
_651
PfGW456L13_652 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 742,407 to 743,717
_652
PfGW456L13_653 - Trk system potassium uptake protein TrkA, at 743,740 to 745,116
_653
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 742.662 kb on + strand, within PfGW456L13_652 at 742.763 kb on + strand, within PfGW456L13_652 at 742.764 kb on - strand, within PfGW456L13_652 at 742.916 kb on + strand, within PfGW456L13_652 at 742.959 kb on + strand, within PfGW456L13_652 at 742.960 kb on - strand, within PfGW456L13_652 at 743.007 kb on + strand, within PfGW456L13_652 at 743.007 kb on + strand, within PfGW456L13_652 at 743.008 kb on - strand, within PfGW456L13_652 at 743.227 kb on + strand, within PfGW456L13_652 at 743.515 kb on - strand, within PfGW456L13_652 at 743.515 kb on - strand, within PfGW456L13_652 at 743.515 kb on - strand, within PfGW456L13_652 at 743.676 kb on + strand at 743.676 kb on + strand at 743.676 kb on + strand at 743.677 kb on - strand at 743.677 kb on - strand at 743.677 kb on - strand at 743.679 kb on + strand at 743.680 kb on - strand at 743.680 kb on - strand at 743.814 kb on + strand at 743.814 kb on + strand at 743.815 kb on - strand at 743.815 kb on - strand at 743.815 kb on - strand at 743.815 kb on - strand at 743.817 kb on + strand at 743.817 kb on + strand at 743.817 kb on + strand at 743.817 kb on + strand at 743.817 kb on + strand at 743.817 kb on + strand at 743.818 kb on - strand at 743.818 kb on - strand at 743.818 kb on - strand at 743.882 kb on + strand, within PfGW456L13_653 at 744.049 kb on + strand, within PfGW456L13_653 at 744.133 kb on + strand, within PfGW456L13_653 at 744.133 kb on + strand, within PfGW456L13_653 at 744.134 kb on - strand, within PfGW456L13_653 at 744.134 kb on - strand, within PfGW456L13_653 at 744.134 kb on - strand, within PfGW456L13_653 at 744.134 kb on - strand, within PfGW456L13_653 at 744.220 kb on + strand, within PfGW456L13_653 at 744.220 kb on + strand, within PfGW456L13_653 at 744.220 kb on + strand, within PfGW456L13_653 at 744.365 kb on + strand, within PfGW456L13_653 at 744.365 kb on + strand, within PfGW456L13_653 at 744.366 kb on - strand, within PfGW456L13_653 at 744.433 kb on + strand, within PfGW456L13_653 at 744.433 kb on + strand, within PfGW456L13_653 at 744.433 kb on + strand, within PfGW456L13_653 at 744.434 kb on - strand, within PfGW456L13_653 at 744.434 kb on - strand, within PfGW456L13_653 at 744.435 kb on + strand, within PfGW456L13_653 at 744.436 kb on - strand, within PfGW456L13_653 at 744.534 kb on - strand, within PfGW456L13_653 at 744.534 kb on - strand, within PfGW456L13_653 at 744.672 kb on + strand, within PfGW456L13_653
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 742,662 + PfGW456L13_652 0.19 +0.4 742,763 + PfGW456L13_652 0.27 -1.1 742,764 - PfGW456L13_652 0.27 -1.2 742,916 + PfGW456L13_652 0.39 -0.1 742,959 + PfGW456L13_652 0.42 -0.1 742,960 - PfGW456L13_652 0.42 -0.1 743,007 + PfGW456L13_652 0.46 -0.6 743,007 + PfGW456L13_652 0.46 -1.6 743,008 - PfGW456L13_652 0.46 -0.1 743,227 + PfGW456L13_652 0.63 +0.4 743,515 - PfGW456L13_652 0.85 -1.5 743,515 - PfGW456L13_652 0.85 -0.1 743,515 - PfGW456L13_652 0.85 -1.1 743,676 + -1.4 743,676 + -0.4 743,676 + +1.2 743,677 - +1.1 743,677 - +1.9 743,677 - +0.5 743,679 + -0.3 743,680 - +1.4 743,680 - -1.7 743,814 + -0.9 743,814 + -1.7 743,815 - -0.7 743,815 - +1.6 743,815 - -0.9 743,815 - +0.6 743,817 + -0.9 743,817 + -1.6 743,817 + +0.0 743,817 + +0.5 743,817 + +1.9 743,817 + -0.6 743,818 - -0.9 743,818 - +0.5 743,818 - -2.5 743,882 + PfGW456L13_653 0.10 +1.6 744,049 + PfGW456L13_653 0.22 -1.5 744,133 + PfGW456L13_653 0.29 -1.5 744,133 + PfGW456L13_653 0.29 +0.9 744,134 - PfGW456L13_653 0.29 -1.6 744,134 - PfGW456L13_653 0.29 -0.5 744,134 - PfGW456L13_653 0.29 -0.1 744,134 - PfGW456L13_653 0.29 +0.1 744,220 + PfGW456L13_653 0.35 +0.5 744,220 + PfGW456L13_653 0.35 +0.6 744,220 + PfGW456L13_653 0.35 -0.1 744,365 + PfGW456L13_653 0.45 -2.6 744,365 + PfGW456L13_653 0.45 -0.5 744,366 - PfGW456L13_653 0.45 -0.3 744,433 + PfGW456L13_653 0.50 -0.4 744,433 + PfGW456L13_653 0.50 -0.1 744,433 + PfGW456L13_653 0.50 -0.9 744,434 - PfGW456L13_653 0.50 -0.3 744,434 - PfGW456L13_653 0.50 -1.0 744,435 + PfGW456L13_653 0.50 -3.2 744,436 - PfGW456L13_653 0.51 +0.2 744,534 - PfGW456L13_653 0.58 +0.7 744,534 - PfGW456L13_653 0.58 -0.9 744,672 + PfGW456L13_653 0.68 -1.1
Or see this region's nucleotide sequence