Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_597

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_596 and PfGW456L13_597 are separated by 114 nucleotidesPfGW456L13_597 and PfGW456L13_598 are separated by 117 nucleotidesPfGW456L13_598 and PfGW456L13_599 overlap by 1 nucleotides PfGW456L13_596 - Homoserine kinase (EC 2.7.1.39), at 690,424 to 691,374 _596 PfGW456L13_597 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 691,489 to 692,418 _597 PfGW456L13_598 - Zinc uptake regulation protein ZUR, at 692,536 to 692,958 _598 PfGW456L13_599 - Zinc ABC transporter, ATP-binding protein ZnuC, at 692,958 to 693,743 _599 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 691.373 kb on - strandat 691.373 kb on - strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.441 kb on + strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.442 kb on - strandat 691.490 kb on + strandat 691.547 kb on + strandat 691.547 kb on + strandat 691.547 kb on + strandat 691.548 kb on - strandat 691.787 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.814 kb on + strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 691.815 kb on - strand, within PfGW456L13_597at 692.061 kb on + strand, within PfGW456L13_597at 692.124 kb on + strand, within PfGW456L13_597at 692.124 kb on + strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.125 kb on - strand, within PfGW456L13_597at 692.177 kb on + strand, within PfGW456L13_597at 692.177 kb on + strand, within PfGW456L13_597at 692.206 kb on + strand, within PfGW456L13_597at 692.206 kb on + strand, within PfGW456L13_597at 692.206 kb on + strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.207 kb on - strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.228 kb on + strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.229 kb on - strand, within PfGW456L13_597at 692.232 kb on + strand, within PfGW456L13_597at 692.232 kb on + strand, within PfGW456L13_597at 692.232 kb on + strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.233 kb on - strand, within PfGW456L13_597at 692.377 kb on - strandat 692.443 kb on + strandat 692.443 kb on + strandat 692.443 kb on + strandat 692.444 kb on - strandat 692.444 kb on - strandat 692.480 kb on + strandat 692.481 kb on - strandat 692.641 kb on + strand, within PfGW456L13_598at 692.641 kb on + strand, within PfGW456L13_598at 692.642 kb on - strand, within PfGW456L13_598at 692.701 kb on + strand, within PfGW456L13_598at 692.702 kb on - strand, within PfGW456L13_598at 693.171 kb on + strand, within PfGW456L13_599at 693.171 kb on + strand, within PfGW456L13_599at 693.171 kb on + strand, within PfGW456L13_599at 693.172 kb on - strand, within PfGW456L13_599at 693.172 kb on - strand, within PfGW456L13_599at 693.349 kb on + strand, within PfGW456L13_599

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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691,373 - -0.3
691,373 - +0.8
691,441 + +0.2
691,441 + -0.1
691,441 + -0.6
691,441 + +0.4
691,441 + -0.3
691,441 + -0.1
691,441 + -0.8
691,441 + +1.4
691,442 - +0.3
691,442 - +0.4
691,442 - +1.3
691,442 - +2.0
691,442 - -1.4
691,442 - +0.4
691,442 - -1.2
691,442 - -0.1
691,442 - +0.1
691,490 + +1.6
691,547 + -1.8
691,547 + +0.1
691,547 + -1.5
691,548 - -1.7
691,787 + PfGW456L13_597 0.32 -1.5
691,814 + PfGW456L13_597 0.35 -0.8
691,814 + PfGW456L13_597 0.35 -1.5
691,814 + PfGW456L13_597 0.35 -2.5
691,814 + PfGW456L13_597 0.35 -1.2
691,815 - PfGW456L13_597 0.35 -1.8
691,815 - PfGW456L13_597 0.35 -0.8
691,815 - PfGW456L13_597 0.35 -2.1
691,815 - PfGW456L13_597 0.35 -0.7
691,815 - PfGW456L13_597 0.35 +0.7
692,061 + PfGW456L13_597 0.62 -2.2
692,124 + PfGW456L13_597 0.68 +1.2
692,124 + PfGW456L13_597 0.68 -2.7
692,125 - PfGW456L13_597 0.68 -1.7
692,125 - PfGW456L13_597 0.68 +1.2
692,125 - PfGW456L13_597 0.68 -0.7
692,125 - PfGW456L13_597 0.68 +0.6
692,125 - PfGW456L13_597 0.68 -0.1
692,125 - PfGW456L13_597 0.68 -1.2
692,125 - PfGW456L13_597 0.68 -1.6
692,125 - PfGW456L13_597 0.68 -0.5
692,125 - PfGW456L13_597 0.68 -0.3
692,125 - PfGW456L13_597 0.68 -0.1
692,177 + PfGW456L13_597 0.74 -0.6
692,177 + PfGW456L13_597 0.74 -0.5
692,206 + PfGW456L13_597 0.77 -1.3
692,206 + PfGW456L13_597 0.77 -0.7
692,206 + PfGW456L13_597 0.77 +0.9
692,207 - PfGW456L13_597 0.77 +0.6
692,207 - PfGW456L13_597 0.77 -0.7
692,207 - PfGW456L13_597 0.77 +0.1
692,207 - PfGW456L13_597 0.77 -0.5
692,228 + PfGW456L13_597 0.79 -0.5
692,228 + PfGW456L13_597 0.79 +0.3
692,228 + PfGW456L13_597 0.79 -2.7
692,228 + PfGW456L13_597 0.79 +0.0
692,228 + PfGW456L13_597 0.79 -1.5
692,228 + PfGW456L13_597 0.79 -0.1
692,228 + PfGW456L13_597 0.79 +0.4
692,228 + PfGW456L13_597 0.79 -0.6
692,228 + PfGW456L13_597 0.79 -1.5
692,228 + PfGW456L13_597 0.79 +0.1
692,228 + PfGW456L13_597 0.79 -0.1
692,229 - PfGW456L13_597 0.80 -1.2
692,229 - PfGW456L13_597 0.80 -0.9
692,229 - PfGW456L13_597 0.80 -2.0
692,229 - PfGW456L13_597 0.80 -1.4
692,229 - PfGW456L13_597 0.80 -0.4
692,229 - PfGW456L13_597 0.80 -0.1
692,229 - PfGW456L13_597 0.80 -1.4
692,229 - PfGW456L13_597 0.80 +0.4
692,229 - PfGW456L13_597 0.80 -0.6
692,229 - PfGW456L13_597 0.80 +0.2
692,229 - PfGW456L13_597 0.80 -1.8
692,229 - PfGW456L13_597 0.80 -1.8
692,229 - PfGW456L13_597 0.80 -1.2
692,229 - PfGW456L13_597 0.80 -1.1
692,229 - PfGW456L13_597 0.80 -0.1
692,229 - PfGW456L13_597 0.80 -1.9
692,229 - PfGW456L13_597 0.80 +1.5
692,229 - PfGW456L13_597 0.80 -1.4
692,229 - PfGW456L13_597 0.80 +0.1
692,232 + PfGW456L13_597 0.80 +0.7
692,232 + PfGW456L13_597 0.80 -1.2
692,232 + PfGW456L13_597 0.80 -0.2
692,233 - PfGW456L13_597 0.80 -0.0
692,233 - PfGW456L13_597 0.80 -2.9
692,233 - PfGW456L13_597 0.80 -1.4
692,233 - PfGW456L13_597 0.80 -0.4
692,233 - PfGW456L13_597 0.80 -1.2
692,233 - PfGW456L13_597 0.80 -2.8
692,377 - -0.4
692,443 + -0.0
692,443 + -0.5
692,443 + +0.4
692,444 - -0.5
692,444 - -1.1
692,480 + +0.7
692,481 - +2.2
692,641 + PfGW456L13_598 0.25 +0.6
692,641 + PfGW456L13_598 0.25 +0.0
692,642 - PfGW456L13_598 0.25 +1.4
692,701 + PfGW456L13_598 0.39 +0.1
692,702 - PfGW456L13_598 0.39 -0.4
693,171 + PfGW456L13_599 0.27 +0.3
693,171 + PfGW456L13_599 0.27 -0.1
693,171 + PfGW456L13_599 0.27 +0.3
693,172 - PfGW456L13_599 0.27 -0.6
693,172 - PfGW456L13_599 0.27 -0.1
693,349 + PfGW456L13_599 0.50 +0.9

Or see this region's nucleotide sequence