Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_403

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_401 and PfGW456L13_402 are separated by 40 nucleotidesPfGW456L13_402 and PfGW456L13_403 are separated by 164 nucleotidesPfGW456L13_403 and PfGW456L13_404 overlap by 4 nucleotidesPfGW456L13_404 and PfGW456L13_405 are separated by 88 nucleotides PfGW456L13_401 - C4-dicarboxylate transport transcriptional regulatory protein, at 463,493 to 464,887 _401 PfGW456L13_402 - Histone acetyltransferase HPA2 and related acetyltransferases, at 464,928 to 465,383 _402 PfGW456L13_403 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7), at 465,548 to 466,375 _403 PfGW456L13_404 - ADP compounds hydrolase NudE (EC 3.6.1.-), at 466,372 to 466,938 _404 PfGW456L13_405 - FIG001957: putative hydrolase, at 467,027 to 467,689 _405 Position (kb) 465 466 467Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 465.093 kb on + strand, within PfGW456L13_402at 465.093 kb on + strand, within PfGW456L13_402at 465.094 kb on - strand, within PfGW456L13_402at 465.156 kb on - strand, within PfGW456L13_402at 465.196 kb on - strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.537 kb on + strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.642 kb on + strand, within PfGW456L13_403at 465.990 kb on + strand, within PfGW456L13_403at 465.991 kb on - strand, within PfGW456L13_403at 465.991 kb on - strand, within PfGW456L13_403at 466.418 kb on + strandat 466.418 kb on + strandat 466.419 kb on - strandat 466.419 kb on - strandat 466.446 kb on + strand, within PfGW456L13_404at 466.446 kb on + strand, within PfGW456L13_404at 466.561 kb on + strand, within PfGW456L13_404at 466.561 kb on + strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.562 kb on - strand, within PfGW456L13_404at 466.583 kb on + strand, within PfGW456L13_404at 466.583 kb on + strand, within PfGW456L13_404at 466.722 kb on - strand, within PfGW456L13_404at 466.722 kb on - strand, within PfGW456L13_404at 466.742 kb on + strand, within PfGW456L13_404at 466.742 kb on + strand, within PfGW456L13_404at 466.742 kb on + strand, within PfGW456L13_404at 466.742 kb on + strand, within PfGW456L13_404at 466.742 kb on + strand, within PfGW456L13_404at 466.743 kb on - strand, within PfGW456L13_404at 466.743 kb on - strand, within PfGW456L13_404at 466.743 kb on - strand, within PfGW456L13_404at 466.743 kb on - strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on + strand, within PfGW456L13_404at 466.832 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.833 kb on - strand, within PfGW456L13_404at 466.918 kb on + strandat 466.919 kb on - strandat 466.919 kb on - strandat 466.919 kb on - strandat 466.964 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.967 kb on + strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.968 kb on - strandat 466.991 kb on + strandat 466.992 kb on - strandat 466.992 kb on - strandat 467.008 kb on + strandat 467.008 kb on + strandat 467.008 kb on + strandat 467.009 kb on - strandat 467.139 kb on - strand, within PfGW456L13_405

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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465,093 + PfGW456L13_402 0.36 -2.3
465,093 + PfGW456L13_402 0.36 +0.9
465,094 - PfGW456L13_402 0.36 -0.7
465,156 - PfGW456L13_402 0.50 -0.2
465,196 - PfGW456L13_402 0.59 -1.7
465,311 + PfGW456L13_402 0.84 -0.0
465,311 + PfGW456L13_402 0.84 -1.4
465,311 + PfGW456L13_402 0.84 +0.6
465,311 + PfGW456L13_402 0.84 +0.7
465,312 - PfGW456L13_402 0.84 +0.5
465,312 - PfGW456L13_402 0.84 -0.3
465,312 - PfGW456L13_402 0.84 -0.3
465,312 - PfGW456L13_402 0.84 +1.4
465,312 - PfGW456L13_402 0.84 -0.4
465,312 - PfGW456L13_402 0.84 +0.7
465,366 + -0.0
465,366 + -0.6
465,366 + -0.0
465,366 + -0.6
465,366 + -0.8
465,366 + -0.8
465,367 - +0.1
465,367 - +1.5
465,367 - -0.1
465,367 - -0.4
465,367 - -0.6
465,367 - -0.3
465,367 - +0.5
465,367 - -0.8
465,537 + -0.9
465,538 - -0.9
465,538 - +1.3
465,538 - -0.4
465,538 - -1.2
465,538 - +0.6
465,538 - -0.9
465,538 - -1.2
465,538 - +1.2
465,642 + PfGW456L13_403 0.11 -0.6
465,990 + PfGW456L13_403 0.53 -2.2
465,991 - PfGW456L13_403 0.54 -1.0
465,991 - PfGW456L13_403 0.54 +0.0
466,418 + -0.3
466,418 + -0.3
466,419 - +2.2
466,419 - -3.3
466,446 + PfGW456L13_404 0.13 -0.3
466,446 + PfGW456L13_404 0.13 -0.3
466,561 + PfGW456L13_404 0.33 +0.2
466,561 + PfGW456L13_404 0.33 -0.7
466,562 - PfGW456L13_404 0.34 -1.5
466,562 - PfGW456L13_404 0.34 +0.4
466,562 - PfGW456L13_404 0.34 -0.5
466,562 - PfGW456L13_404 0.34 -0.4
466,562 - PfGW456L13_404 0.34 -0.0
466,562 - PfGW456L13_404 0.34 -1.1
466,562 - PfGW456L13_404 0.34 -1.5
466,562 - PfGW456L13_404 0.34 +4.6
466,583 + PfGW456L13_404 0.37 -0.2
466,583 + PfGW456L13_404 0.37 +0.2
466,722 - PfGW456L13_404 0.62 -1.4
466,722 - PfGW456L13_404 0.62 +0.8
466,742 + PfGW456L13_404 0.65 -0.1
466,742 + PfGW456L13_404 0.65 +0.7
466,742 + PfGW456L13_404 0.65 -0.4
466,742 + PfGW456L13_404 0.65 +0.3
466,742 + PfGW456L13_404 0.65 +0.4
466,743 - PfGW456L13_404 0.65 +0.2
466,743 - PfGW456L13_404 0.65 +0.1
466,743 - PfGW456L13_404 0.65 -1.2
466,743 - PfGW456L13_404 0.65 -0.6
466,832 + PfGW456L13_404 0.81 +0.4
466,832 + PfGW456L13_404 0.81 -0.6
466,832 + PfGW456L13_404 0.81 -0.2
466,832 + PfGW456L13_404 0.81 +0.3
466,832 + PfGW456L13_404 0.81 -0.9
466,832 + PfGW456L13_404 0.81 -0.5
466,832 + PfGW456L13_404 0.81 -0.1
466,832 + PfGW456L13_404 0.81 -1.9
466,832 + PfGW456L13_404 0.81 -0.6
466,832 - PfGW456L13_404 0.81 -0.6
466,833 - PfGW456L13_404 0.81 +0.9
466,833 - PfGW456L13_404 0.81 +0.5
466,833 - PfGW456L13_404 0.81 +0.9
466,833 - PfGW456L13_404 0.81 +1.2
466,833 - PfGW456L13_404 0.81 +1.5
466,833 - PfGW456L13_404 0.81 -0.8
466,833 - PfGW456L13_404 0.81 -0.1
466,833 - PfGW456L13_404 0.81 -0.9
466,833 - PfGW456L13_404 0.81 +0.9
466,833 - PfGW456L13_404 0.81 -0.5
466,833 - PfGW456L13_404 0.81 -0.8
466,833 - PfGW456L13_404 0.81 -1.1
466,833 - PfGW456L13_404 0.81 +0.4
466,833 - PfGW456L13_404 0.81 +0.5
466,918 + +0.4
466,919 - -0.5
466,919 - -1.3
466,919 - +0.2
466,964 + -0.7
466,967 + +0.9
466,967 + -0.3
466,967 + -0.7
466,967 + +1.4
466,967 + -0.8
466,967 + +0.7
466,967 + +1.5
466,967 + -0.4
466,967 + -0.1
466,967 + +0.0
466,968 - -1.0
466,968 - +0.2
466,968 - -0.4
466,968 - -0.6
466,968 - -1.0
466,968 - +0.7
466,968 - -0.3
466,968 - -0.3
466,968 - +0.3
466,968 - -2.3
466,968 - -1.0
466,991 + -0.2
466,992 - -0.2
466,992 - -0.9
467,008 + +0.0
467,008 + +0.3
467,008 + +1.5
467,009 - -0.2
467,139 - PfGW456L13_405 0.17 +0.5

Or see this region's nucleotide sequence