Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2418

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2416 and PfGW456L13_2417 overlap by 4 nucleotidesPfGW456L13_2417 and PfGW456L13_2418 are separated by 86 nucleotidesPfGW456L13_2418 and PfGW456L13_2419 are separated by 615 nucleotides PfGW456L13_2416 - Mobile element protein, at 2,680,353 to 2,681,189 _2416 PfGW456L13_2417 - Mobile element protein, at 2,681,186 to 2,681,491 _2417 PfGW456L13_2418 - hypothetical protein, at 2,681,578 to 2,681,892 _2418 PfGW456L13_2419 - Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ, at 2,682,508 to 2,684,577 _2419 Position (kb) 2681 2682Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2681.542 kb on + strandat 2681.545 kb on + strandat 2681.567 kb on + strandat 2681.741 kb on + strand, within PfGW456L13_2418at 2681.962 kb on + strandat 2681.962 kb on + strandat 2681.963 kb on - strandat 2681.963 kb on - strandat 2681.963 kb on - strandat 2681.963 kb on - strandat 2681.963 kb on - strandat 2681.963 kb on - strandat 2682.019 kb on + strandat 2682.019 kb on + strandat 2682.019 kb on + strandat 2682.020 kb on - strandat 2682.020 kb on - strandat 2682.020 kb on - strandat 2682.043 kb on - strandat 2682.043 kb on - strandat 2682.112 kb on - strandat 2682.232 kb on + strandat 2682.364 kb on - strandat 2682.458 kb on - strandat 2682.545 kb on + strandat 2682.545 kb on + strandat 2682.546 kb on - strandat 2682.546 kb on - strandat 2682.546 kb on - strandat 2682.722 kb on + strand, within PfGW456L13_2419at 2682.722 kb on + strand, within PfGW456L13_2419at 2682.722 kb on + strand, within PfGW456L13_2419at 2682.723 kb on - strand, within PfGW456L13_2419at 2682.788 kb on + strand, within PfGW456L13_2419at 2682.789 kb on - strand, within PfGW456L13_2419at 2682.789 kb on - strand, within PfGW456L13_2419at 2682.851 kb on + strand, within PfGW456L13_2419at 2682.852 kb on - strand, within PfGW456L13_2419at 2682.852 kb on - strand, within PfGW456L13_2419at 2682.852 kb on - strand, within PfGW456L13_2419at 2682.852 kb on - strand, within PfGW456L13_2419

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,681,542 + +0.7
2,681,545 + -1.3
2,681,567 + -0.9
2,681,741 + PfGW456L13_2418 0.52 -0.8
2,681,962 + +2.2
2,681,962 + -0.1
2,681,963 - +3.1
2,681,963 - -0.5
2,681,963 - -0.6
2,681,963 - +0.1
2,681,963 - -1.0
2,681,963 - -0.3
2,682,019 + +0.3
2,682,019 + +0.2
2,682,019 + +0.5
2,682,020 - -0.7
2,682,020 - -1.5
2,682,020 - -0.1
2,682,043 - +1.4
2,682,043 - -0.5
2,682,112 - -0.1
2,682,232 + +0.3
2,682,364 - -0.5
2,682,458 - -1.4
2,682,545 + +0.0
2,682,545 + +0.4
2,682,546 - +0.8
2,682,546 - -0.4
2,682,546 - -0.5
2,682,722 + PfGW456L13_2419 0.10 -1.9
2,682,722 + PfGW456L13_2419 0.10 -0.1
2,682,722 + PfGW456L13_2419 0.10 +1.1
2,682,723 - PfGW456L13_2419 0.10 -0.7
2,682,788 + PfGW456L13_2419 0.14 -0.3
2,682,789 - PfGW456L13_2419 0.14 +0.3
2,682,789 - PfGW456L13_2419 0.14 -0.0
2,682,851 + PfGW456L13_2419 0.17 -0.3
2,682,852 - PfGW456L13_2419 0.17 +0.0
2,682,852 - PfGW456L13_2419 0.17 -0.1
2,682,852 - PfGW456L13_2419 0.17 +0.1
2,682,852 - PfGW456L13_2419 0.17 +0.3

Or see this region's nucleotide sequence