Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_187

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_185 and PfGW456L13_186 are separated by 33 nucleotidesPfGW456L13_186 and PfGW456L13_187 overlap by 13 nucleotidesPfGW456L13_187 and PfGW456L13_188 are separated by 476 nucleotides PfGW456L13_185 - Predicted hydroxymethylpyrimidine transporter CytX, at 209,985 to 211,277 _185 PfGW456L13_186 - hypothetical protein, at 211,311 to 211,442 _186 PfGW456L13_187 - Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17), at 211,430 to 213,319 _187 PfGW456L13_188 - Type I secretion outer membrane protein, TolC precursor, at 213,796 to 215,235 _188 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 210.502 kb on + strand, within PfGW456L13_185at 210.502 kb on + strand, within PfGW456L13_185at 210.503 kb on - strand, within PfGW456L13_185at 210.764 kb on + strand, within PfGW456L13_185at 210.875 kb on + strand, within PfGW456L13_185at 211.219 kb on - strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.255 kb on + strandat 211.256 kb on - strandat 211.256 kb on - strandat 211.256 kb on - strandat 211.284 kb on + strandat 211.284 kb on + strandat 211.285 kb on - strandat 211.285 kb on - strandat 211.310 kb on + strandat 211.310 kb on + strandat 211.310 kb on + strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.443 kb on + strandat 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.786 kb on + strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.787 kb on - strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.788 kb on + strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.789 kb on - strand, within PfGW456L13_187at 211.854 kb on + strand, within PfGW456L13_187at 211.854 kb on + strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.855 kb on - strand, within PfGW456L13_187at 211.920 kb on + strand, within PfGW456L13_187at 211.959 kb on + strand, within PfGW456L13_187at 211.960 kb on - strand, within PfGW456L13_187at 211.960 kb on - strand, within PfGW456L13_187at 212.181 kb on + strand, within PfGW456L13_187at 212.182 kb on - strand, within PfGW456L13_187at 212.182 kb on - strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.220 kb on + strand, within PfGW456L13_187at 212.221 kb on - strand, within PfGW456L13_187at 212.221 kb on - strand, within PfGW456L13_187at 212.320 kb on - strand, within PfGW456L13_187at 212.320 kb on - strand, within PfGW456L13_187at 212.353 kb on - strand, within PfGW456L13_187at 212.449 kb on - strand, within PfGW456L13_187at 212.482 kb on + strand, within PfGW456L13_187at 212.482 kb on + strand, within PfGW456L13_187at 212.483 kb on - strand, within PfGW456L13_187at 212.850 kb on + strand, within PfGW456L13_187at 212.850 kb on + strand, within PfGW456L13_187at 212.850 kb on + strand, within PfGW456L13_187at 212.850 kb on + strand, within PfGW456L13_187at 212.850 kb on + strand, within PfGW456L13_187at 212.850 kb on + strand, within PfGW456L13_187at 212.850 kb on + strand, within PfGW456L13_187at 212.851 kb on - strand, within PfGW456L13_187at 212.851 kb on - strand, within PfGW456L13_187at 212.851 kb on - strand, within PfGW456L13_187at 212.851 kb on - strand, within PfGW456L13_187at 212.851 kb on - strand, within PfGW456L13_187at 212.851 kb on - strand, within PfGW456L13_187at 212.851 kb on - strand, within PfGW456L13_187at 212.886 kb on + strand, within PfGW456L13_187at 213.102 kb on + strand, within PfGW456L13_187at 213.103 kb on - strand, within PfGW456L13_187at 213.120 kb on + strand, within PfGW456L13_187at 213.120 kb on + strand, within PfGW456L13_187at 213.120 kb on + strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.121 kb on - strand, within PfGW456L13_187at 213.313 kb on + strandat 213.313 kb on + strandat 213.313 kb on + strandat 213.313 kb on + strandat 213.314 kb on - strandat 213.314 kb on - strandat 213.374 kb on + strandat 213.374 kb on + strandat 213.375 kb on - strandat 213.548 kb on + strandat 213.549 kb on - strandat 213.599 kb on + strandat 213.600 kb on - strandat 213.654 kb on + strandat 213.654 kb on + strandat 213.658 kb on + strandat 213.658 kb on + strandat 213.658 kb on + strandat 213.658 kb on + strandat 213.659 kb on - strandat 213.659 kb on - strandat 213.659 kb on - strandat 213.659 kb on - strandat 213.667 kb on + strandat 213.668 kb on - strandat 213.668 kb on - strandat 213.668 kb on - strandat 213.698 kb on + strandat 213.698 kb on + strandat 213.698 kb on + strandat 213.698 kb on + strandat 213.698 kb on + strandat 213.698 kb on + strandat 213.698 kb on + strandat 213.698 kb on + strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.699 kb on - strandat 213.747 kb on - strandat 213.747 kb on - strandat 213.765 kb on - strandat 213.772 kb on + strandat 213.772 kb on + strandat 213.773 kb on - strandat 213.773 kb on - strandat 213.773 kb on - strandat 213.795 kb on + strandat 213.795 kb on + strandat 213.795 kb on + strandat 213.795 kb on + strandat 213.796 kb on - strandat 213.902 kb on - strandat 213.902 kb on - strandat 213.902 kb on - strandat 214.038 kb on + strand, within PfGW456L13_188at 214.038 kb on + strand, within PfGW456L13_188at 214.038 kb on + strand, within PfGW456L13_188at 214.038 kb on + strand, within PfGW456L13_188at 214.038 kb on + strand, within PfGW456L13_188at 214.038 kb on + strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strandat 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.039 kb on - strand, within PfGW456L13_188at 214.088 kb on - strand, within PfGW456L13_188at 214.225 kb on + strand, within PfGW456L13_188at 214.225 kb on + strand, within PfGW456L13_188at 214.226 kb on - strand, within PfGW456L13_188

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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210,502 + PfGW456L13_185 0.40 -1.2
210,502 + PfGW456L13_185 0.40 +0.6
210,503 - PfGW456L13_185 0.40 -0.1
210,764 + PfGW456L13_185 0.60 +0.3
210,875 + PfGW456L13_185 0.69 -1.0
211,219 - -1.1
211,255 + +1.3
211,255 + -0.6
211,255 + +0.2
211,255 + -1.2
211,255 + +0.2
211,255 + -0.7
211,255 + -1.7
211,255 + +1.3
211,256 - +0.5
211,256 - -0.3
211,256 - -0.6
211,284 + +0.9
211,284 + -2.4
211,285 - -0.1
211,285 - -0.2
211,310 + -0.5
211,310 + -0.3
211,310 + -0.6
211,311 - +1.0
211,311 - +0.8
211,311 - -0.5
211,311 - +0.1
211,311 - -1.1
211,443 + -0.1
211,786 + PfGW456L13_187 0.19 +0.7
211,786 + PfGW456L13_187 0.19 +0.5
211,786 + PfGW456L13_187 0.19 +0.0
211,786 + PfGW456L13_187 0.19 -0.2
211,786 + PfGW456L13_187 0.19 +0.2
211,787 - PfGW456L13_187 0.19 +0.8
211,787 - PfGW456L13_187 0.19 -0.2
211,787 - PfGW456L13_187 0.19 -0.1
211,787 - PfGW456L13_187 0.19 -1.5
211,787 - PfGW456L13_187 0.19 -0.4
211,787 - PfGW456L13_187 0.19 +1.2
211,788 + PfGW456L13_187 0.19 -0.0
211,788 + PfGW456L13_187 0.19 +0.9
211,788 + PfGW456L13_187 0.19 +0.4
211,788 + PfGW456L13_187 0.19 -0.2
211,788 + PfGW456L13_187 0.19 +2.5
211,789 - PfGW456L13_187 0.19 -1.9
211,789 - PfGW456L13_187 0.19 +0.9
211,789 - PfGW456L13_187 0.19 +0.2
211,789 - PfGW456L13_187 0.19 +0.0
211,789 - PfGW456L13_187 0.19 -0.3
211,789 - PfGW456L13_187 0.19 -0.1
211,789 - PfGW456L13_187 0.19 -0.3
211,789 - PfGW456L13_187 0.19 +0.2
211,789 - PfGW456L13_187 0.19 +1.9
211,789 - PfGW456L13_187 0.19 -0.6
211,789 - PfGW456L13_187 0.19 -0.0
211,789 - PfGW456L13_187 0.19 +0.5
211,854 + PfGW456L13_187 0.22 -0.6
211,854 + PfGW456L13_187 0.22 +0.3
211,855 - PfGW456L13_187 0.22 +0.0
211,855 - PfGW456L13_187 0.22 -0.5
211,855 - PfGW456L13_187 0.22 +1.3
211,855 - PfGW456L13_187 0.22 -0.2
211,920 + PfGW456L13_187 0.26 +0.2
211,959 + PfGW456L13_187 0.28 -0.6
211,960 - PfGW456L13_187 0.28 +0.0
211,960 - PfGW456L13_187 0.28 +0.3
212,181 + PfGW456L13_187 0.40 +1.6
212,182 - PfGW456L13_187 0.40 -1.3
212,182 - PfGW456L13_187 0.40 +1.1
212,220 + PfGW456L13_187 0.42 -1.1
212,220 + PfGW456L13_187 0.42 -0.2
212,220 + PfGW456L13_187 0.42 -0.5
212,220 + PfGW456L13_187 0.42 -0.3
212,221 - PfGW456L13_187 0.42 +0.9
212,221 - PfGW456L13_187 0.42 +0.3
212,320 - PfGW456L13_187 0.47 -0.6
212,320 - PfGW456L13_187 0.47 +1.1
212,353 - PfGW456L13_187 0.49 +0.4
212,449 - PfGW456L13_187 0.54 +0.2
212,482 + PfGW456L13_187 0.56 -0.2
212,482 + PfGW456L13_187 0.56 -0.3
212,483 - PfGW456L13_187 0.56 +0.6
212,850 + PfGW456L13_187 0.75 -0.1
212,850 + PfGW456L13_187 0.75 -1.2
212,850 + PfGW456L13_187 0.75 +0.2
212,850 + PfGW456L13_187 0.75 -0.1
212,850 + PfGW456L13_187 0.75 -0.5
212,850 + PfGW456L13_187 0.75 +0.0
212,850 + PfGW456L13_187 0.75 -0.2
212,851 - PfGW456L13_187 0.75 +1.6
212,851 - PfGW456L13_187 0.75 +1.2
212,851 - PfGW456L13_187 0.75 +0.7
212,851 - PfGW456L13_187 0.75 +0.7
212,851 - PfGW456L13_187 0.75 -0.7
212,851 - PfGW456L13_187 0.75 +2.2
212,851 - PfGW456L13_187 0.75 -0.3
212,886 + PfGW456L13_187 0.77 +0.7
213,102 + PfGW456L13_187 0.88 -0.4
213,103 - PfGW456L13_187 0.89 -0.1
213,120 + PfGW456L13_187 0.89 -0.2
213,120 + PfGW456L13_187 0.89 -0.1
213,120 + PfGW456L13_187 0.89 -2.0
213,121 - PfGW456L13_187 0.89 -0.4
213,121 - PfGW456L13_187 0.89 +3.5
213,121 - PfGW456L13_187 0.89 +0.2
213,121 - PfGW456L13_187 0.89 -0.1
213,121 - PfGW456L13_187 0.89 +0.5
213,121 - PfGW456L13_187 0.89 +0.2
213,121 - PfGW456L13_187 0.89 -0.6
213,121 - PfGW456L13_187 0.89 -0.2
213,121 - PfGW456L13_187 0.89 -4.1
213,121 - PfGW456L13_187 0.89 +0.0
213,121 - PfGW456L13_187 0.89 +0.1
213,313 + -1.1
213,313 + +0.2
213,313 + +0.9
213,313 + -0.5
213,314 - +0.7
213,314 - -1.0
213,374 + +1.6
213,374 + +2.1
213,375 - -0.6
213,548 + +0.7
213,549 - -1.7
213,599 + -1.6
213,600 - -2.1
213,654 + -1.3
213,654 + -0.5
213,658 + +1.0
213,658 + -0.2
213,658 + +1.1
213,658 + +1.2
213,659 - +0.2
213,659 - -0.6
213,659 - -0.7
213,659 - -1.3
213,667 + +1.6
213,668 - +0.9
213,668 - -0.5
213,668 - -0.2
213,698 + -0.1
213,698 + -0.7
213,698 + +0.0
213,698 + +0.3
213,698 + +1.9
213,698 + -2.0
213,698 + -0.0
213,698 + +1.3
213,699 - -0.7
213,699 - -0.5
213,699 - +1.0
213,699 - +1.7
213,699 - -0.8
213,699 - -1.0
213,699 - -0.6
213,699 - +0.1
213,699 - -0.8
213,747 - +2.9
213,747 - +0.2
213,765 - -0.0
213,772 + -0.9
213,772 + +1.8
213,773 - +0.6
213,773 - -0.7
213,773 - +0.2
213,795 + +1.0
213,795 + -0.4
213,795 + -0.3
213,795 + +0.1
213,796 - -0.6
213,902 - -1.1
213,902 - -0.7
213,902 - -0.1
214,038 + PfGW456L13_188 0.17 +1.3
214,038 + PfGW456L13_188 0.17 -0.9
214,038 + PfGW456L13_188 0.17 -0.0
214,038 + PfGW456L13_188 0.17 +0.3
214,038 + PfGW456L13_188 0.17 -0.2
214,038 + PfGW456L13_188 0.17 +2.1
214,039 - PfGW456L13_188 0.17 +0.7
214,039 - PfGW456L13_188 0.17 +1.3
214,039 - PfGW456L13_188 0.17 -1.4
214,039 - PfGW456L13_188 0.17 -0.4
214,039 - PfGW456L13_188 0.17 +0.1
214,039 - -1.1
214,039 - PfGW456L13_188 0.17 +0.4
214,039 - PfGW456L13_188 0.17 +0.9
214,039 - PfGW456L13_188 0.17 +0.3
214,039 - PfGW456L13_188 0.17 +0.5
214,088 - PfGW456L13_188 0.20 -0.6
214,225 + PfGW456L13_188 0.30 +1.3
214,225 + PfGW456L13_188 0.30 -0.4
214,226 - PfGW456L13_188 0.30 +0.3

Or see this region's nucleotide sequence