Experiment: R2A with Lithium chloride 900 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0853 and Atu0854 are separated by 24 nucleotides Atu0854 and Atu0855 are separated by 97 nucleotides Atu0855 and Atu0856 are separated by 47 nucleotides
Atu0853: Atu0853 - hypothetical protein, at 853,560 to 854,288
Atu0853
Atu0854: Atu0854 - hypothetical protein, at 854,313 to 854,807
Atu0854
Atu0855: Atu0855 - hypothetical protein, at 854,905 to 855,684
Atu0855
Atu0856: Atu0856 - transcriptional regulator, LysR family, at 855,732 to 856,496
Atu0856
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 854.113 kb on - strand, within Atu0853 at 854.228 kb on - strand at 854.249 kb on + strand at 854.255 kb on - strand at 854.257 kb on - strand at 854.257 kb on - strand at 854.352 kb on + strand at 854.455 kb on + strand, within Atu0854 at 854.474 kb on - strand, within Atu0854 at 854.566 kb on + strand, within Atu0854 at 854.679 kb on - strand, within Atu0854 at 854.679 kb on - strand, within Atu0854 at 854.692 kb on + strand, within Atu0854 at 854.797 kb on - strand at 854.821 kb on + strand at 854.896 kb on - strand at 855.032 kb on + strand, within Atu0855 at 855.032 kb on + strand, within Atu0855 at 855.089 kb on + strand, within Atu0855 at 855.090 kb on + strand, within Atu0855 at 855.097 kb on + strand, within Atu0855 at 855.098 kb on - strand, within Atu0855 at 855.104 kb on - strand, within Atu0855 at 855.105 kb on - strand, within Atu0855 at 855.109 kb on + strand, within Atu0855 at 855.117 kb on - strand, within Atu0855 at 855.124 kb on + strand, within Atu0855 at 855.124 kb on + strand, within Atu0855 at 855.132 kb on - strand, within Atu0855 at 855.145 kb on + strand, within Atu0855 at 855.180 kb on - strand, within Atu0855 at 855.199 kb on + strand, within Atu0855 at 855.199 kb on + strand, within Atu0855 at 855.207 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.266 kb on - strand, within Atu0855 at 855.338 kb on + strand, within Atu0855 at 855.338 kb on + strand, within Atu0855 at 855.346 kb on - strand, within Atu0855 at 855.391 kb on + strand, within Atu0855 at 855.462 kb on + strand, within Atu0855 at 855.462 kb on + strand, within Atu0855 at 855.625 kb on + strand at 855.785 kb on - strand at 855.802 kb on + strand at 855.810 kb on - strand, within Atu0856 at 855.870 kb on + strand, within Atu0856 at 855.906 kb on + strand, within Atu0856 at 855.908 kb on - strand, within Atu0856 at 855.914 kb on - strand, within Atu0856 at 856.123 kb on - strand, within Atu0856 at 856.173 kb on - strand, within Atu0856 at 856.209 kb on + strand, within Atu0856 at 856.222 kb on - strand, within Atu0856 at 856.257 kb on + strand, within Atu0856 at 856.270 kb on + strand, within Atu0856 at 856.334 kb on - strand, within Atu0856 at 856.426 kb on + strand at 856.454 kb on + strand at 856.510 kb on - strand at 856.510 kb on - strand at 856.526 kb on - strand at 856.544 kb on + strand at 856.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lithium chloride 900 mM remove 854,113 - Atu0853 0.76 -1.7 854,228 - -0.3 854,249 + +0.0 854,255 - -1.0 854,257 - +0.9 854,257 - +0.9 854,352 + +0.3 854,455 + Atu0854 0.29 +0.4 854,474 - Atu0854 0.33 -0.1 854,566 + Atu0854 0.51 -0.8 854,679 - Atu0854 0.74 +0.1 854,679 - Atu0854 0.74 +0.9 854,692 + Atu0854 0.77 +0.7 854,797 - -0.7 854,821 + -0.2 854,896 - +2.2 855,032 + Atu0855 0.16 -0.5 855,032 + Atu0855 0.16 +0.5 855,089 + Atu0855 0.24 +0.7 855,090 + Atu0855 0.24 -0.3 855,097 + Atu0855 0.25 +0.4 855,098 - Atu0855 0.25 -1.0 855,104 - Atu0855 0.26 -0.2 855,105 - Atu0855 0.26 -0.2 855,109 + Atu0855 0.26 -2.2 855,117 - Atu0855 0.27 -1.0 855,124 + Atu0855 0.28 -0.1 855,124 + Atu0855 0.28 -1.1 855,132 - Atu0855 0.29 +0.3 855,145 + Atu0855 0.31 -0.2 855,180 - Atu0855 0.35 -0.4 855,199 + Atu0855 0.38 -0.6 855,199 + Atu0855 0.38 +0.0 855,207 - Atu0855 0.39 -0.7 855,266 - Atu0855 0.46 +0.3 855,266 - Atu0855 0.46 -0.3 855,266 - Atu0855 0.46 -0.4 855,338 + Atu0855 0.56 -0.0 855,338 + Atu0855 0.56 +0.6 855,346 - Atu0855 0.57 -0.3 855,391 + Atu0855 0.62 -0.0 855,462 + Atu0855 0.71 -0.9 855,462 + Atu0855 0.71 -0.4 855,625 + -0.1 855,785 - +2.1 855,802 + -0.2 855,810 - Atu0856 0.10 +1.8 855,870 + Atu0856 0.18 +0.5 855,906 + Atu0856 0.23 -1.4 855,908 - Atu0856 0.23 -0.0 855,914 - Atu0856 0.24 -0.0 856,123 - Atu0856 0.51 +0.0 856,173 - Atu0856 0.58 +0.0 856,209 + Atu0856 0.62 +0.3 856,222 - Atu0856 0.64 +0.1 856,257 + Atu0856 0.69 -0.5 856,270 + Atu0856 0.70 -0.4 856,334 - Atu0856 0.79 +0.4 856,426 + +0.1 856,454 + -0.2 856,510 - -0.1 856,510 - -0.0 856,526 - -0.2 856,544 + -0.7 856,552 - -0.0
Or see this region's nucleotide sequence