Strain Fitness in Agrobacterium fabrum C58 around Atu3867

Experiment: R2A with Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3866 and Atu3867 are separated by 4 nucleotidesAtu3867 and Atu3868 are separated by 168 nucleotides Atu3866: Atu3866 - hypothetical protein, at 957,239 to 959,644 Atu3866 Atu3867: Atu3867 - hypothetical protein, at 959,649 to 960,527 Atu3867 Atu3868: Atu3868 - hypothetical protein, at 960,696 to 961,934 Atu3868 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1at 958.741 kb on + strand, within Atu3866at 958.778 kb on - strand, within Atu3866at 958.822 kb on + strand, within Atu3866at 958.830 kb on - strand, within Atu3866at 958.940 kb on + strand, within Atu3866at 958.967 kb on - strand, within Atu3866at 959.002 kb on + strand, within Atu3866at 959.017 kb on + strand, within Atu3866at 959.088 kb on - strand, within Atu3866at 959.286 kb on + strand, within Atu3866at 959.294 kb on - strand, within Atu3866at 959.373 kb on - strand, within Atu3866at 959.373 kb on - strand, within Atu3866at 959.391 kb on + strand, within Atu3866at 959.462 kb on + strandat 959.587 kb on + strandat 959.644 kb on + strandat 959.644 kb on + strandat 959.652 kb on - strandat 959.652 kb on - strandat 959.652 kb on - strandat 959.669 kb on + strandat 959.675 kb on + strandat 959.675 kb on + strandat 959.675 kb on + strandat 959.683 kb on - strandat 959.684 kb on - strandat 959.735 kb on + strandat 959.743 kb on - strand, within Atu3867at 959.796 kb on - strand, within Atu3867at 959.806 kb on + strand, within Atu3867at 959.905 kb on - strand, within Atu3867at 959.966 kb on + strand, within Atu3867at 960.022 kb on - strand, within Atu3867at 960.025 kb on + strand, within Atu3867at 960.163 kb on - strand, within Atu3867at 960.175 kb on + strand, within Atu3867at 960.228 kb on + strand, within Atu3867at 960.246 kb on - strand, within Atu3867at 960.260 kb on + strand, within Atu3867at 960.288 kb on - strand, within Atu3867at 960.303 kb on - strand, within Atu3867at 960.322 kb on - strand, within Atu3867at 960.442 kb on - strandat 960.442 kb on - strandat 960.465 kb on + strandat 960.498 kb on - strandat 960.603 kb on - strandat 960.666 kb on + strandat 960.697 kb on - strandat 960.700 kb on - strandat 960.780 kb on - strandat 960.849 kb on + strand, within Atu3868at 960.906 kb on - strand, within Atu3868at 960.909 kb on + strand, within Atu3868at 960.911 kb on - strand, within Atu3868at 960.924 kb on + strand, within Atu3868at 961.055 kb on + strand, within Atu3868at 961.055 kb on + strand, within Atu3868at 961.063 kb on - strand, within Atu3868at 961.063 kb on - strand, within Atu3868at 961.169 kb on + strand, within Atu3868at 961.215 kb on + strand, within Atu3868at 961.223 kb on - strand, within Atu3868at 961.223 kb on - strand, within Atu3868at 961.235 kb on + strand, within Atu3868at 961.248 kb on - strand, within Atu3868at 961.254 kb on - strand, within Atu3868at 961.258 kb on - strand, within Atu3868at 961.330 kb on - strand, within Atu3868at 961.354 kb on - strand, within Atu3868at 961.382 kb on + strand, within Atu3868at 961.382 kb on + strand, within Atu3868at 961.382 kb on + strand, within Atu3868at 961.390 kb on - strand, within Atu3868at 961.390 kb on - strand, within Atu3868at 961.390 kb on - strand, within Atu3868at 961.392 kb on + strand, within Atu3868at 961.397 kb on + strand, within Atu3868at 961.400 kb on - strand, within Atu3868

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 800 mM
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958,741 + Atu3866 0.62 -0.7
958,778 - Atu3866 0.64 -0.5
958,822 + Atu3866 0.66 -1.2
958,830 - Atu3866 0.66 -0.9
958,940 + Atu3866 0.71 -0.9
958,967 - Atu3866 0.72 -0.4
959,002 + Atu3866 0.73 -0.2
959,017 + Atu3866 0.74 -1.2
959,088 - Atu3866 0.77 -0.4
959,286 + Atu3866 0.85 -1.9
959,294 - Atu3866 0.85 -0.5
959,373 - Atu3866 0.89 -0.9
959,373 - Atu3866 0.89 -0.8
959,391 + Atu3866 0.89 -0.8
959,462 + -0.5
959,587 + -0.4
959,644 + +0.2
959,644 + -0.1
959,652 - -0.6
959,652 - +0.1
959,652 - -1.1
959,669 + -0.8
959,675 + -0.7
959,675 + -0.0
959,675 + -1.3
959,683 - -1.1
959,684 - -0.5
959,735 + -1.0
959,743 - Atu3867 0.11 -1.6
959,796 - Atu3867 0.17 -0.1
959,806 + Atu3867 0.18 +0.3
959,905 - Atu3867 0.29 -0.1
959,966 + Atu3867 0.36 -0.5
960,022 - Atu3867 0.42 -2.7
960,025 + Atu3867 0.43 -0.5
960,163 - Atu3867 0.58 -0.9
960,175 + Atu3867 0.60 -0.5
960,228 + Atu3867 0.66 -0.3
960,246 - Atu3867 0.68 -0.8
960,260 + Atu3867 0.70 -0.7
960,288 - Atu3867 0.73 -1.4
960,303 - Atu3867 0.74 -0.4
960,322 - Atu3867 0.77 -0.2
960,442 - -0.6
960,442 - -0.9
960,465 + -1.0
960,498 - -0.4
960,603 - +0.6
960,666 + +0.0
960,697 - +0.2
960,700 - +0.4
960,780 - +0.1
960,849 + Atu3868 0.12 +1.2
960,906 - Atu3868 0.17 +0.1
960,909 + Atu3868 0.17 -1.4
960,911 - Atu3868 0.17 +0.2
960,924 + Atu3868 0.18 -0.6
961,055 + Atu3868 0.29 +0.3
961,055 + Atu3868 0.29 +0.4
961,063 - Atu3868 0.30 -1.2
961,063 - Atu3868 0.30 +0.2
961,169 + Atu3868 0.38 -0.2
961,215 + Atu3868 0.42 +0.0
961,223 - Atu3868 0.43 +0.0
961,223 - Atu3868 0.43 -1.0
961,235 + Atu3868 0.44 +0.4
961,248 - Atu3868 0.45 -1.2
961,254 - Atu3868 0.45 -1.7
961,258 - Atu3868 0.45 +0.3
961,330 - Atu3868 0.51 -0.2
961,354 - Atu3868 0.53 -0.4
961,382 + Atu3868 0.55 -1.1
961,382 + Atu3868 0.55 -0.6
961,382 + Atu3868 0.55 -0.3
961,390 - Atu3868 0.56 +0.9
961,390 - Atu3868 0.56 +0.8
961,390 - Atu3868 0.56 +0.4
961,392 + Atu3868 0.56 +0.5
961,397 + Atu3868 0.57 -0.3
961,400 - Atu3868 0.57 -0.3

Or see this region's nucleotide sequence