Strain Fitness in Agrobacterium fabrum C58 around Atu3076

Experiment: R2A with Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3074 and Atu3075 are separated by 87 nucleotidesAtu3075 and Atu3076 are separated by 98 nucleotidesAtu3076 and Atu3077 are separated by 255 nucleotides Atu3074: Atu3074 - short chain dehydrogenase, at 79,784 to 80,557 Atu3074 Atu3075: Atu3075 - TetR family transcriptional regulator, at 80,645 to 81,289 Atu3075 Atu3076: Atu3076 - uracil transport protein, at 81,388 to 82,710 Atu3076 Atu3077: Atu3077 - beta-lactamase, at 82,966 to 84,123 Atu3077 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.388 kb on - strand, within Atu3074at 80.432 kb on - strand, within Atu3074at 80.453 kb on + strand, within Atu3074at 80.453 kb on + strand, within Atu3074at 80.461 kb on - strand, within Atu3074at 80.506 kb on - strandat 80.681 kb on - strandat 80.731 kb on + strand, within Atu3075at 80.767 kb on - strand, within Atu3075at 80.822 kb on + strand, within Atu3075at 80.926 kb on + strand, within Atu3075at 80.952 kb on - strand, within Atu3075at 81.024 kb on - strand, within Atu3075at 81.041 kb on + strand, within Atu3075at 81.163 kb on + strand, within Atu3075at 81.204 kb on + strand, within Atu3075at 81.344 kb on - strandat 81.366 kb on - strandat 81.383 kb on + strandat 81.397 kb on - strandat 81.517 kb on - strandat 81.614 kb on - strand, within Atu3076at 81.622 kb on + strand, within Atu3076at 81.653 kb on + strand, within Atu3076at 81.716 kb on + strand, within Atu3076at 81.750 kb on + strand, within Atu3076at 82.209 kb on - strand, within Atu3076at 82.209 kb on - strand, within Atu3076at 82.209 kb on - strand, within Atu3076at 82.253 kb on - strand, within Atu3076at 82.276 kb on + strand, within Atu3076at 82.276 kb on + strand, within Atu3076at 82.442 kb on - strand, within Atu3076at 82.583 kb on - strandat 82.585 kb on - strandat 82.703 kb on - strandat 82.964 kb on + strandat 82.971 kb on - strandat 83.035 kb on - strandat 83.185 kb on - strand, within Atu3077at 83.215 kb on + strand, within Atu3077at 83.215 kb on + strand, within Atu3077at 83.221 kb on - strand, within Atu3077at 83.221 kb on - strand, within Atu3077at 83.221 kb on - strand, within Atu3077at 83.223 kb on - strand, within Atu3077at 83.223 kb on - strand, within Atu3077at 83.223 kb on - strand, within Atu3077at 83.257 kb on - strand, within Atu3077at 83.262 kb on - strand, within Atu3077at 83.339 kb on + strand, within Atu3077at 83.426 kb on - strand, within Atu3077at 83.479 kb on - strand, within Atu3077at 83.543 kb on - strand, within Atu3077

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 800 mM
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80,388 - Atu3074 0.78 +0.5
80,432 - Atu3074 0.84 -1.3
80,453 + Atu3074 0.86 -0.1
80,453 + Atu3074 0.86 +0.2
80,461 - Atu3074 0.87 -0.4
80,506 - +0.2
80,681 - +0.1
80,731 + Atu3075 0.13 +0.3
80,767 - Atu3075 0.19 -2.3
80,822 + Atu3075 0.27 +0.5
80,926 + Atu3075 0.44 +0.1
80,952 - Atu3075 0.48 +0.0
81,024 - Atu3075 0.59 +0.7
81,041 + Atu3075 0.61 +0.3
81,163 + Atu3075 0.80 -0.3
81,204 + Atu3075 0.87 -0.2
81,344 - +0.3
81,366 - +0.1
81,383 + +1.2
81,397 - +0.3
81,517 - -0.2
81,614 - Atu3076 0.17 -0.3
81,622 + Atu3076 0.18 -1.2
81,653 + Atu3076 0.20 -0.5
81,716 + Atu3076 0.25 -0.5
81,750 + Atu3076 0.27 -1.1
82,209 - Atu3076 0.62 -0.9
82,209 - Atu3076 0.62 -0.1
82,209 - Atu3076 0.62 +0.5
82,253 - Atu3076 0.65 -0.3
82,276 + Atu3076 0.67 +2.7
82,276 + Atu3076 0.67 -0.1
82,442 - Atu3076 0.80 -0.2
82,583 - -0.4
82,585 - +0.6
82,703 - +0.3
82,964 + +0.2
82,971 - -0.6
83,035 - +0.1
83,185 - Atu3077 0.19 +0.1
83,215 + Atu3077 0.22 -0.9
83,215 + Atu3077 0.22 -0.8
83,221 - Atu3077 0.22 -0.4
83,221 - Atu3077 0.22 +0.1
83,221 - Atu3077 0.22 -0.3
83,223 - Atu3077 0.22 -1.5
83,223 - Atu3077 0.22 -0.4
83,223 - Atu3077 0.22 +0.5
83,257 - Atu3077 0.25 +0.2
83,262 - Atu3077 0.26 -0.1
83,339 + Atu3077 0.32 +0.4
83,426 - Atu3077 0.40 -0.2
83,479 - Atu3077 0.44 +0.2
83,543 - Atu3077 0.50 +0.1

Or see this region's nucleotide sequence