Experiment: R2A with Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3074 and Atu3075 are separated by 87 nucleotides Atu3075 and Atu3076 are separated by 98 nucleotides Atu3076 and Atu3077 are separated by 255 nucleotides
Atu3074: Atu3074 - short chain dehydrogenase, at 79,784 to 80,557
Atu3074
Atu3075: Atu3075 - TetR family transcriptional regulator, at 80,645 to 81,289
Atu3075
Atu3076: Atu3076 - uracil transport protein, at 81,388 to 82,710
Atu3076
Atu3077: Atu3077 - beta-lactamase, at 82,966 to 84,123
Atu3077
Position (kb)
81
82
83 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 80.388 kb on - strand, within Atu3074 at 80.432 kb on - strand, within Atu3074 at 80.453 kb on + strand, within Atu3074 at 80.453 kb on + strand, within Atu3074 at 80.461 kb on - strand, within Atu3074 at 80.506 kb on - strand at 80.681 kb on - strand at 80.731 kb on + strand, within Atu3075 at 80.767 kb on - strand, within Atu3075 at 80.822 kb on + strand, within Atu3075 at 80.926 kb on + strand, within Atu3075 at 80.952 kb on - strand, within Atu3075 at 81.024 kb on - strand, within Atu3075 at 81.041 kb on + strand, within Atu3075 at 81.163 kb on + strand, within Atu3075 at 81.204 kb on + strand, within Atu3075 at 81.344 kb on - strand at 81.366 kb on - strand at 81.383 kb on + strand at 81.397 kb on - strand at 81.517 kb on - strand at 81.614 kb on - strand, within Atu3076 at 81.622 kb on + strand, within Atu3076 at 81.653 kb on + strand, within Atu3076 at 81.716 kb on + strand, within Atu3076 at 81.750 kb on + strand, within Atu3076 at 82.209 kb on - strand, within Atu3076 at 82.209 kb on - strand, within Atu3076 at 82.209 kb on - strand, within Atu3076 at 82.253 kb on - strand, within Atu3076 at 82.276 kb on + strand, within Atu3076 at 82.276 kb on + strand, within Atu3076 at 82.442 kb on - strand, within Atu3076 at 82.583 kb on - strand at 82.585 kb on - strand at 82.703 kb on - strand at 82.964 kb on + strand at 82.971 kb on - strand at 83.035 kb on - strand at 83.185 kb on - strand, within Atu3077 at 83.215 kb on + strand, within Atu3077 at 83.215 kb on + strand, within Atu3077 at 83.221 kb on - strand, within Atu3077 at 83.221 kb on - strand, within Atu3077 at 83.221 kb on - strand, within Atu3077 at 83.223 kb on - strand, within Atu3077 at 83.223 kb on - strand, within Atu3077 at 83.223 kb on - strand, within Atu3077 at 83.257 kb on - strand, within Atu3077 at 83.262 kb on - strand, within Atu3077 at 83.339 kb on + strand, within Atu3077 at 83.426 kb on - strand, within Atu3077 at 83.479 kb on - strand, within Atu3077 at 83.543 kb on - strand, within Atu3077
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 800 mM remove 80,388 - Atu3074 0.78 +0.5 80,432 - Atu3074 0.84 -1.3 80,453 + Atu3074 0.86 -0.1 80,453 + Atu3074 0.86 +0.2 80,461 - Atu3074 0.87 -0.4 80,506 - +0.2 80,681 - +0.1 80,731 + Atu3075 0.13 +0.3 80,767 - Atu3075 0.19 -2.3 80,822 + Atu3075 0.27 +0.5 80,926 + Atu3075 0.44 +0.1 80,952 - Atu3075 0.48 +0.0 81,024 - Atu3075 0.59 +0.7 81,041 + Atu3075 0.61 +0.3 81,163 + Atu3075 0.80 -0.3 81,204 + Atu3075 0.87 -0.2 81,344 - +0.3 81,366 - +0.1 81,383 + +1.2 81,397 - +0.3 81,517 - -0.2 81,614 - Atu3076 0.17 -0.3 81,622 + Atu3076 0.18 -1.2 81,653 + Atu3076 0.20 -0.5 81,716 + Atu3076 0.25 -0.5 81,750 + Atu3076 0.27 -1.1 82,209 - Atu3076 0.62 -0.9 82,209 - Atu3076 0.62 -0.1 82,209 - Atu3076 0.62 +0.5 82,253 - Atu3076 0.65 -0.3 82,276 + Atu3076 0.67 +2.7 82,276 + Atu3076 0.67 -0.1 82,442 - Atu3076 0.80 -0.2 82,583 - -0.4 82,585 - +0.6 82,703 - +0.3 82,964 + +0.2 82,971 - -0.6 83,035 - +0.1 83,185 - Atu3077 0.19 +0.1 83,215 + Atu3077 0.22 -0.9 83,215 + Atu3077 0.22 -0.8 83,221 - Atu3077 0.22 -0.4 83,221 - Atu3077 0.22 +0.1 83,221 - Atu3077 0.22 -0.3 83,223 - Atu3077 0.22 -1.5 83,223 - Atu3077 0.22 -0.4 83,223 - Atu3077 0.22 +0.5 83,257 - Atu3077 0.25 +0.2 83,262 - Atu3077 0.26 -0.1 83,339 + Atu3077 0.32 +0.4 83,426 - Atu3077 0.40 -0.2 83,479 - Atu3077 0.44 +0.2 83,543 - Atu3077 0.50 +0.1
Or see this region's nucleotide sequence