Strain Fitness in Agrobacterium fabrum C58 around Atu4058

Experiment: R2A with m-arsenite 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4057 and Atu4058 are separated by 117 nucleotidesAtu4058 and Atu4059 are separated by 51 nucleotides Atu4057: Atu4057 - succinoglycan biosynthesis transport protein, at 1,174,676 to 1,176,154 Atu4057 Atu4058: Atu4058 - succinoglycan biosynthesis protein, at 1,176,272 to 1,177,237 Atu4058 Atu4059: Atu4059 - succinoglycan biosynthesis protein, at 1,177,289 to 1,178,257 Atu4059 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -1 0 1at 1176.203 kb on + strandat 1176.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM
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1,176,203 + +0.4
1,176,262 + +1.0

Or see this region's nucleotide sequence