Strain Fitness in Agrobacterium fabrum C58 around Atu3736

Experiment: R2A with m-arsenite 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu8191 and Atu8192 are separated by 11 nucleotidesAtu8192 and Atu3736 are separated by 323 nucleotidesAtu3736 and Atu3737 are separated by 62 nucleotides Atu8191: Atu8191 - hypothetical protein, at 814,088 to 814,465 Atu8191 Atu8192: Atu8192 - hypothetical protein, at 814,477 to 814,749 Atu8192 Atu3736: Atu3736 - transketolase, at 815,073 to 817,055 Atu3736 Atu3737: Atu3737 - glyceraldehyde 3-phosphate dehydrogenase, at 817,118 to 818,128 Atu3737 Position (kb) 815 816 817 818Strain fitness (log2 ratio) -2 -1 0 1at 814.134 kb on - strand, within Atu8191at 814.425 kb on + strand, within Atu8191at 814.483 kb on + strandat 814.586 kb on - strand, within Atu8192at 814.824 kb on - strandat 814.826 kb on + strandat 814.847 kb on + strandat 817.040 kb on + strandat 817.572 kb on - strand, within Atu3737at 817.927 kb on + strand, within Atu3737

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM
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814,134 - Atu8191 0.12 -0.9
814,425 + Atu8191 0.89 -0.4
814,483 + +0.7
814,586 - Atu8192 0.40 -0.3
814,824 - +0.8
814,826 + -0.3
814,847 + +0.6
817,040 + +0.7
817,572 - Atu3737 0.45 +0.8
817,927 + Atu3737 0.80 -2.0

Or see this region's nucleotide sequence