Strain Fitness in Agrobacterium fabrum C58 around Atu2443

Experiment: R2A with m-arsenite 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2441 and Atu2442 are separated by 145 nucleotidesAtu2442 and Atu2443 are separated by 38 nucleotidesAtu2443 and Atu2444 are separated by 284 nucleotides Atu2441: Atu2441 - RNA methylase, at 2,411,598 to 2,412,296 Atu2441 Atu2442: Atu2442 - hypothetical protein, at 2,412,442 to 2,412,834 Atu2442 Atu2443: Atu2443 - ribosomal large subunit pseudouridine synthase, RluD subfamily, at 2,412,873 to 2,413,895 Atu2443 Atu2444: Atu2444 - hypothetical protein, at 2,414,180 to 2,415,004 Atu2444 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -1 0 1 2 3at 2411.929 kb on - strand, within Atu2441at 2411.934 kb on - strand, within Atu2441at 2412.026 kb on - strand, within Atu2441at 2412.080 kb on - strand, within Atu2441at 2412.355 kb on - strandat 2412.403 kb on + strandat 2412.408 kb on + strandat 2412.426 kb on - strandat 2412.441 kb on - strandat 2412.515 kb on + strand, within Atu2442at 2412.588 kb on - strand, within Atu2442at 2412.688 kb on + strand, within Atu2442at 2413.016 kb on + strand, within Atu2443at 2413.797 kb on + strandat 2413.814 kb on + strandat 2414.060 kb on - strandat 2414.153 kb on - strandat 2414.175 kb on - strandat 2414.216 kb on - strandat 2414.380 kb on + strand, within Atu2444at 2414.411 kb on - strand, within Atu2444at 2414.413 kb on + strand, within Atu2444at 2414.483 kb on + strand, within Atu2444at 2414.643 kb on + strand, within Atu2444at 2414.718 kb on + strand, within Atu2444at 2414.774 kb on - strand, within Atu2444at 2414.862 kb on + strand, within Atu2444at 2414.870 kb on - strand, within Atu2444

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM
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2,411,929 - Atu2441 0.47 +0.3
2,411,934 - Atu2441 0.48 +0.2
2,412,026 - Atu2441 0.61 +0.4
2,412,080 - Atu2441 0.69 +0.7
2,412,355 - -1.0
2,412,403 + +0.0
2,412,408 + -0.4
2,412,426 - +0.6
2,412,441 - -0.2
2,412,515 + Atu2442 0.19 +2.4
2,412,588 - Atu2442 0.37 +1.8
2,412,688 + Atu2442 0.63 +3.2
2,413,016 + Atu2443 0.14 +0.2
2,413,797 + -1.1
2,413,814 + +1.6
2,414,060 - +0.3
2,414,153 - -0.1
2,414,175 - +0.1
2,414,216 - -0.6
2,414,380 + Atu2444 0.24 +0.1
2,414,411 - Atu2444 0.28 -0.3
2,414,413 + Atu2444 0.28 -0.3
2,414,483 + Atu2444 0.37 -0.5
2,414,643 + Atu2444 0.56 -0.5
2,414,718 + Atu2444 0.65 +0.2
2,414,774 - Atu2444 0.72 +0.3
2,414,862 + Atu2444 0.83 +0.1
2,414,870 - Atu2444 0.84 -0.1

Or see this region's nucleotide sequence