Strain Fitness in Agrobacterium fabrum C58 around Atu1926

Experiment: R2A with m-arsenite 0.8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu1924 and Atu1925 are separated by 138 nucleotidesAtu1925 and Atu1926 are separated by 303 nucleotidesAtu1926 and Atu1927 overlap by 4 nucleotides Atu1924: Atu1924 - 30S ribosomal protein S11, at 1,902,430 to 1,902,819 Atu1924 Atu1925: Atu1925 - 30S ribosomal protein S13, at 1,902,958 to 1,903,326 Atu1925 Atu1926: Atu1926 - adenylate kinase, at 1,903,630 to 1,904,220 Atu1926 Atu1927: Atu1927 - Preprotein translocase SECY subunit, at 1,904,217 to 1,905,557 Atu1927 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -1 0 1at 1903.554 kb on + strandat 1903.573 kb on + strandat 1903.606 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM
remove
1,903,554 + -0.5
1,903,573 + -0.1
1,903,606 + +1.3

Or see this region's nucleotide sequence