Experiment: R2A with m-arsenite 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0216 and Atu0217 are separated by 9 nucleotides Atu0217 and Atu0218 are separated by 14 nucleotides
Atu0216: Atu0216 - components of type IV pilus, at 220,902 to 221,888
Atu0216
Atu0217: Atu0217 - components of type IV pilus, at 221,898 to 222,902
Atu0217
Atu0218: Atu0218 - component of type IV pilus, at 222,917 to 224,392
Atu0218
Position (kb) 221
222
223 Strain fitness (log2 ratio) -1
0
1
2 at 220.908 kb on - strand at 220.908 kb on - strand at 221.059 kb on + strand, within Atu0216 at 221.059 kb on + strand, within Atu0216 at 221.086 kb on + strand, within Atu0216 at 221.101 kb on + strand, within Atu0216 at 221.125 kb on - strand, within Atu0216 at 221.181 kb on + strand, within Atu0216 at 221.310 kb on - strand, within Atu0216 at 221.312 kb on + strand, within Atu0216 at 221.318 kb on + strand, within Atu0216 at 221.335 kb on - strand, within Atu0216 at 221.788 kb on + strand, within Atu0216 at 221.826 kb on + strand at 221.999 kb on + strand, within Atu0217 at 222.054 kb on - strand, within Atu0217 at 222.108 kb on - strand, within Atu0217 at 222.115 kb on - strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.245 kb on - strand, within Atu0217 at 222.360 kb on + strand, within Atu0217 at 222.398 kb on + strand, within Atu0217 at 222.474 kb on - strand, within Atu0217 at 222.485 kb on - strand, within Atu0217 at 222.496 kb on + strand, within Atu0217 at 222.504 kb on - strand, within Atu0217 at 222.524 kb on + strand, within Atu0217 at 222.532 kb on - strand, within Atu0217 at 222.545 kb on + strand, within Atu0217 at 222.595 kb on + strand, within Atu0217 at 222.703 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.784 kb on + strand, within Atu0217 at 222.846 kb on - strand at 222.853 kb on + strand at 222.904 kb on - strand at 222.977 kb on - strand at 222.977 kb on - strand at 223.015 kb on - strand at 223.018 kb on + strand at 223.021 kb on - strand at 223.035 kb on + strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.086 kb on - strand, within Atu0218 at 223.125 kb on - strand, within Atu0218 at 223.129 kb on + strand, within Atu0218 at 223.172 kb on - strand, within Atu0218 at 223.181 kb on + strand, within Atu0218 at 223.209 kb on + strand, within Atu0218 at 223.209 kb on + strand, within Atu0218 at 223.217 kb on - strand, within Atu0218 at 223.217 kb on - strand, within Atu0218 at 223.258 kb on + strand, within Atu0218 at 223.265 kb on - strand, within Atu0218 at 223.284 kb on - strand, within Atu0218 at 223.315 kb on - strand, within Atu0218 at 223.334 kb on - strand, within Atu0218 at 223.459 kb on + strand, within Atu0218 at 223.467 kb on - strand, within Atu0218 at 223.505 kb on + strand, within Atu0218 at 223.507 kb on + strand, within Atu0218 at 223.562 kb on - strand, within Atu0218 at 223.720 kb on + strand, within Atu0218 at 223.728 kb on - strand, within Atu0218 at 223.747 kb on + strand, within Atu0218 at 223.764 kb on - strand, within Atu0218 at 223.780 kb on + strand, within Atu0218 at 223.826 kb on - strand, within Atu0218 at 223.859 kb on - strand, within Atu0218
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM remove 220,908 - +0.1 220,908 - -0.4 221,059 + Atu0216 0.16 +0.5 221,059 + Atu0216 0.16 +0.2 221,086 + Atu0216 0.19 +0.4 221,101 + Atu0216 0.20 -0.3 221,125 - Atu0216 0.23 +0.0 221,181 + Atu0216 0.28 +0.5 221,310 - Atu0216 0.41 -0.5 221,312 + Atu0216 0.42 -0.3 221,318 + Atu0216 0.42 +0.2 221,335 - Atu0216 0.44 -0.4 221,788 + Atu0216 0.90 +0.4 221,826 + -0.2 221,999 + Atu0217 0.10 +0.5 222,054 - Atu0217 0.16 +0.6 222,108 - Atu0217 0.21 -0.4 222,115 - Atu0217 0.22 -0.8 222,149 + Atu0217 0.25 +1.2 222,149 + Atu0217 0.25 +0.1 222,245 - Atu0217 0.35 +0.3 222,360 + Atu0217 0.46 -0.0 222,398 + Atu0217 0.50 -0.6 222,474 - Atu0217 0.57 -0.3 222,485 - Atu0217 0.58 +0.1 222,496 + Atu0217 0.60 +0.4 222,504 - Atu0217 0.60 +0.2 222,524 + Atu0217 0.62 +0.9 222,532 - Atu0217 0.63 -0.5 222,545 + Atu0217 0.64 +0.8 222,595 + Atu0217 0.69 +0.2 222,703 + Atu0217 0.80 -0.1 222,745 + Atu0217 0.84 -0.2 222,745 + Atu0217 0.84 +0.2 222,784 + Atu0217 0.88 +0.2 222,846 - +2.2 222,853 + -0.0 222,904 - +0.0 222,977 - +1.3 222,977 - -0.4 223,015 - +0.9 223,018 + -0.3 223,021 - +0.1 223,035 + +0.0 223,043 - -0.1 223,043 - -0.5 223,086 - Atu0218 0.11 -0.3 223,125 - Atu0218 0.14 +0.3 223,129 + Atu0218 0.14 +0.1 223,172 - Atu0218 0.17 -0.1 223,181 + Atu0218 0.18 +1.7 223,209 + Atu0218 0.20 +0.7 223,209 + Atu0218 0.20 +0.2 223,217 - Atu0218 0.20 +0.2 223,217 - Atu0218 0.20 -0.3 223,258 + Atu0218 0.23 +0.1 223,265 - Atu0218 0.24 -0.2 223,284 - Atu0218 0.25 +0.4 223,315 - Atu0218 0.27 +0.3 223,334 - Atu0218 0.28 +1.4 223,459 + Atu0218 0.37 -1.0 223,467 - Atu0218 0.37 +0.3 223,505 + Atu0218 0.40 +0.6 223,507 + Atu0218 0.40 +1.2 223,562 - Atu0218 0.44 -0.8 223,720 + Atu0218 0.54 +0.0 223,728 - Atu0218 0.55 +0.2 223,747 + Atu0218 0.56 +0.5 223,764 - Atu0218 0.57 -0.0 223,780 + Atu0218 0.58 +0.1 223,826 - Atu0218 0.62 +0.3 223,859 - Atu0218 0.64 -1.2
Or see this region's nucleotide sequence