Experiment: R2A with Cesium chloride 1.75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0571 and Atu0572 are separated by 70 nucleotides Atu0572 and Atu0573 are separated by 282 nucleotides Atu0573 and Atu0574 are separated by 105 nucleotides
Atu0571: Atu0571 - chemotaxis MotD protein, at 556,015 to 557,364
Atu0571
Atu0572: Atu0572 - hypothetical protein, at 557,435 to 557,878
Atu0572
Atu0573: Atu0573 - transcriptional regulator, at 558,161 to 558,832
Atu0573
Atu0574: Atu0574 - flagellar hook protein, at 558,938 to 560,215
Atu0574
Position (kb) 558
559 Strain fitness (log2 ratio) -1
0
1
2 at 557.305 kb on + strand at 557.313 kb on - strand at 557.342 kb on - strand at 557.354 kb on - strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.393 kb on - strand at 557.393 kb on - strand at 557.397 kb on + strand at 557.405 kb on + strand at 557.505 kb on - strand, within Atu0572 at 557.541 kb on + strand, within Atu0572 at 557.757 kb on + strand, within Atu0572 at 558.190 kb on + strand at 558.198 kb on - strand at 558.198 kb on - strand at 558.271 kb on + strand, within Atu0573 at 558.279 kb on - strand, within Atu0573 at 558.372 kb on + strand, within Atu0573 at 558.377 kb on + strand, within Atu0573 at 558.430 kb on + strand, within Atu0573 at 558.438 kb on - strand, within Atu0573 at 558.452 kb on + strand, within Atu0573 at 558.476 kb on + strand, within Atu0573 at 558.500 kb on + strand, within Atu0573 at 558.558 kb on - strand, within Atu0573 at 558.576 kb on + strand, within Atu0573 at 558.596 kb on + strand, within Atu0573 at 558.604 kb on - strand, within Atu0573 at 558.604 kb on - strand, within Atu0573 at 558.638 kb on - strand, within Atu0573 at 558.777 kb on + strand at 558.875 kb on - strand at 558.879 kb on + strand at 558.890 kb on + strand at 559.098 kb on + strand, within Atu0574 at 559.150 kb on + strand, within Atu0574 at 559.159 kb on + strand, within Atu0574 at 559.167 kb on - strand, within Atu0574 at 559.172 kb on - strand, within Atu0574 at 559.185 kb on + strand, within Atu0574 at 559.203 kb on - strand, within Atu0574 at 559.214 kb on + strand, within Atu0574 at 559.227 kb on - strand, within Atu0574 at 559.241 kb on - strand, within Atu0574 at 559.241 kb on - strand, within Atu0574 at 559.278 kb on + strand, within Atu0574 at 559.278 kb on + strand, within Atu0574 at 559.326 kb on + strand, within Atu0574 at 559.357 kb on - strand, within Atu0574 at 559.410 kb on + strand, within Atu0574 at 559.413 kb on + strand, within Atu0574 at 559.418 kb on - strand, within Atu0574 at 559.494 kb on - strand, within Atu0574 at 559.534 kb on - strand, within Atu0574 at 559.564 kb on + strand, within Atu0574 at 559.653 kb on + strand, within Atu0574 at 559.675 kb on + strand, within Atu0574 at 559.714 kb on + strand, within Atu0574 at 559.714 kb on + strand, within Atu0574 at 559.714 kb on + strand, within Atu0574 at 559.756 kb on + strand, within Atu0574 at 559.756 kb on + strand, within Atu0574 at 559.756 kb on + strand, within Atu0574 at 559.764 kb on - strand, within Atu0574 at 559.790 kb on - strand, within Atu0574 at 559.798 kb on + strand, within Atu0574 at 559.800 kb on - strand, within Atu0574
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cesium chloride 1.75 mM remove 557,305 + +1.2 557,313 - +0.8 557,342 - +1.0 557,354 - +0.8 557,385 + +0.2 557,385 + +0.5 557,385 + +0.4 557,385 + +0.5 557,393 - +0.7 557,393 - +0.8 557,397 + +0.2 557,405 + +0.5 557,505 - Atu0572 0.16 +0.2 557,541 + Atu0572 0.24 +0.7 557,757 + Atu0572 0.73 +1.2 558,190 + +0.3 558,198 - +1.1 558,198 - +1.2 558,271 + Atu0573 0.16 +1.2 558,279 - Atu0573 0.18 +0.2 558,372 + Atu0573 0.31 +1.7 558,377 + Atu0573 0.32 +0.9 558,430 + Atu0573 0.40 +1.4 558,438 - Atu0573 0.41 +1.6 558,452 + Atu0573 0.43 +0.7 558,476 + Atu0573 0.47 +1.0 558,500 + Atu0573 0.50 +1.1 558,558 - Atu0573 0.59 +1.2 558,576 + Atu0573 0.62 +1.2 558,596 + Atu0573 0.65 +1.2 558,604 - Atu0573 0.66 +1.1 558,604 - Atu0573 0.66 +1.2 558,638 - Atu0573 0.71 +1.1 558,777 + +0.8 558,875 - +0.0 558,879 + +1.2 558,890 + +1.0 559,098 + Atu0574 0.13 +0.8 559,150 + Atu0574 0.17 +2.1 559,159 + Atu0574 0.17 +1.0 559,167 - Atu0574 0.18 +2.2 559,172 - Atu0574 0.18 +1.1 559,185 + Atu0574 0.19 +1.3 559,203 - Atu0574 0.21 +1.1 559,214 + Atu0574 0.22 +1.6 559,227 - Atu0574 0.23 +1.1 559,241 - Atu0574 0.24 +1.2 559,241 - Atu0574 0.24 +0.9 559,278 + Atu0574 0.27 +1.2 559,278 + Atu0574 0.27 +1.9 559,326 + Atu0574 0.30 +0.7 559,357 - Atu0574 0.33 +0.8 559,410 + Atu0574 0.37 +1.2 559,413 + Atu0574 0.37 +1.5 559,418 - Atu0574 0.38 +1.1 559,494 - Atu0574 0.44 +1.8 559,534 - Atu0574 0.47 +1.1 559,564 + Atu0574 0.49 +1.1 559,653 + Atu0574 0.56 +0.8 559,675 + Atu0574 0.58 +1.4 559,714 + Atu0574 0.61 +0.9 559,714 + Atu0574 0.61 +1.0 559,714 + Atu0574 0.61 +1.0 559,756 + Atu0574 0.64 +1.2 559,756 + Atu0574 0.64 +0.8 559,756 + Atu0574 0.64 +1.0 559,764 - Atu0574 0.65 +0.8 559,790 - Atu0574 0.67 +1.0 559,798 + Atu0574 0.67 +1.0 559,800 - Atu0574 0.67 +1.2
Or see this region's nucleotide sequence