Strain Fitness in Agrobacterium fabrum C58 around Atu4791

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
1,965,004	-		Atu8097	0.51	+2.1
1,965,023	+		Atu8097	0.52	-1.4
1,965,031	-		Atu8097	0.53	+0.1
1,965,121	+		Atu8097	0.57	-0.4
1,965,137	+		Atu8097	0.58	+0.3
1,965,196	-		Atu8097	0.61	+0.3
1,965,196	-		Atu8097	0.61	-0.1
1,965,214	+		Atu8097	0.62	+0.4
1,965,222	-		Atu8097	0.63	+0.8
1,965,223	-		Atu8097	0.63	-0.5
1,965,315	+		Atu8097	0.67	-0.3
1,965,324	-		Atu8097	0.68	-0.4
1,965,367	-		Atu8097	0.70	-0.3
1,965,414	+		Atu8097	0.72	+0.6
1,965,480	+		Atu8097	0.76	-0.1
1,965,480	+		Atu8097	0.76	+0.1
1,965,516	+		Atu8097	0.78	-0.0
1,965,526	+		Atu8097	0.78	+0.3
1,965,526	+		Atu8097	0.78	-0.3
1,965,534	-		Atu8097	0.79	-0.2
1,965,581	-		Atu8097	0.81	+0.2
1,965,614	-		Atu8097	0.83	+0.5
1,965,631	+		Atu8097	0.84	-0.4
1,965,661	+		Atu8097	0.85	-0.3
1,965,751	+		Atu8097	0.90	+0.4
1,965,759	-				-1.0
1,965,769	-				+0.9
1,965,817	+				+0.1
1,965,914	+				+0.7
1,965,916	+				+0.0
1,965,957	-				+0.4
1,965,957	-				-0.1
1,966,006	+				-0.2
1,966,059	+		Atu4791	0.15	-1.0
1,966,059	+		Atu4791	0.15	-1.3
1,966,072	-		Atu4791	0.17	-0.7
1,966,263	+		Atu4791	0.56	-0.1
1,966,272	-		Atu4791	0.58	-0.3
1,966,434	+				-0.9
1,966,468	-				+0.4
1,966,468	-				+0.2
1,966,473	-				-0.0
1,966,482	+				+0.2
1,966,575	+				+0.6
1,966,634	+				+0.1
1,966,687	-				+1.2
1,966,755	-				-0.6
1,966,836	-				+0.1
1,966,844	-				+0.1
1,966,867	-				-0.3
1,966,867	-				+0.1
1,966,932	+				-0.6
1,966,932	+				-0.3
1,966,932	-				-0.1
1,967,021	-				+1.0
1,967,058	+		Atu4792	0.14	+0.1
1,967,078	+		Atu4792	0.21	+0.1
1,967,086	-		Atu4792	0.23	+0.9
1,967,230	+		Atu4792	0.72	-1.0
1,967,316	-				-0.0
1,967,371	+				+0.2
1,967,396	+				-0.1
1,967,438	+				-0.6