Strain Fitness in Agrobacterium fabrum C58 around Atu0976

Experiment: R2A with silver chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0975 and Atu0976 overlap by 4 nucleotidesAtu0976 and Atu0977 are separated by 153 nucleotides Atu0975: Atu0975 - cytochrome c-type synthesis protein, at 963,363 to 965,354 Atu0975 Atu0976: Atu0976 - cycL protein, at 965,351 to 965,947 Atu0976 Atu0977: Atu0977 - serine protease DO-like protease, at 966,101 to 967,672 Atu0977 Position (kb) 965 966Strain fitness (log2 ratio) -2 -1 0 1at 965.349 kb on + strandat 965.443 kb on + strand, within Atu0976at 965.453 kb on + strand, within Atu0976at 965.488 kb on + strand, within Atu0976at 966.163 kb on + strandat 966.266 kb on + strand, within Atu0977at 966.390 kb on + strand, within Atu0977at 966.550 kb on + strand, within Atu0977at 966.673 kb on + strand, within Atu0977at 966.846 kb on + strand, within Atu0977

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM
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965,349 + +0.4
965,443 + Atu0976 0.15 -1.3
965,453 + Atu0976 0.17 -0.7
965,488 + Atu0976 0.23 -2.7
966,163 + -1.3
966,266 + Atu0977 0.10 -1.0
966,390 + Atu0977 0.18 +0.2
966,550 + Atu0977 0.29 -1.3
966,673 + Atu0977 0.36 +0.2
966,846 + Atu0977 0.47 -1.1

Or see this region's nucleotide sequence