Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0666 and Atu0667 are separated by 15 nucleotides Atu0667 and Atu0668 overlap by 4 nucleotides Atu0668 and Atu0669 are separated by 259 nucleotides
Atu0666: Atu0666 - glycolate oxidase subunit, at 661,873 to 663,075
Atu0666
Atu0667: Atu0667 - glycolate oxidase iron-sulfur subunit, at 663,091 to 664,392
Atu0667
Atu0668: Atu0668 - hypothetical protein, at 664,389 to 665,048
Atu0668
Atu0669: Atu0669 - hypothetical protein, at 665,308 to 666,084
Atu0669
Position (kb) 663
664
665 Strain fitness (log2 ratio) -1
0
1 at 662.239 kb on + strand, within Atu0666 at 662.247 kb on - strand, within Atu0666 at 662.583 kb on + strand, within Atu0666 at 662.594 kb on - strand, within Atu0666 at 662.712 kb on + strand, within Atu0666 at 662.723 kb on + strand, within Atu0666 at 662.731 kb on - strand, within Atu0666 at 662.763 kb on - strand, within Atu0666 at 662.763 kb on - strand, within Atu0666 at 662.894 kb on + strand, within Atu0666 at 662.934 kb on - strand, within Atu0666 at 663.011 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.081 kb on + strand at 663.089 kb on - strand at 663.089 kb on - strand at 663.089 kb on - strand at 663.107 kb on + strand at 663.193 kb on + strand at 663.208 kb on - strand at 663.228 kb on - strand, within Atu0667 at 663.250 kb on - strand, within Atu0667 at 663.310 kb on - strand, within Atu0667 at 663.321 kb on + strand, within Atu0667 at 663.323 kb on + strand, within Atu0667 at 663.346 kb on - strand, within Atu0667 at 663.485 kb on - strand, within Atu0667 at 663.513 kb on + strand, within Atu0667 at 663.526 kb on - strand, within Atu0667 at 663.685 kb on + strand, within Atu0667 at 663.693 kb on - strand, within Atu0667 at 663.743 kb on + strand, within Atu0667 at 663.761 kb on - strand, within Atu0667 at 663.768 kb on - strand, within Atu0667 at 663.786 kb on + strand, within Atu0667 at 663.892 kb on + strand, within Atu0667 at 663.990 kb on + strand, within Atu0667 at 663.998 kb on - strand, within Atu0667 at 663.998 kb on - strand, within Atu0667 at 664.013 kb on + strand, within Atu0667 at 664.013 kb on + strand, within Atu0667 at 664.025 kb on + strand, within Atu0667 at 664.045 kb on - strand, within Atu0667 at 664.078 kb on - strand, within Atu0667 at 664.092 kb on - strand, within Atu0667 at 664.100 kb on - strand, within Atu0667 at 664.154 kb on + strand, within Atu0667 at 664.157 kb on + strand, within Atu0667 at 664.183 kb on + strand, within Atu0667 at 664.225 kb on - strand, within Atu0667 at 664.299 kb on + strand at 664.299 kb on + strand at 664.299 kb on + strand at 664.307 kb on - strand at 664.322 kb on - strand at 664.342 kb on + strand at 664.489 kb on + strand, within Atu0668 at 664.499 kb on - strand, within Atu0668 at 664.507 kb on - strand, within Atu0668 at 664.537 kb on + strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.715 kb on - strand, within Atu0668 at 664.768 kb on + strand, within Atu0668 at 664.784 kb on + strand, within Atu0668 at 664.860 kb on - strand, within Atu0668 at 665.010 kb on + strand at 665.146 kb on + strand at 665.177 kb on + strand at 665.255 kb on + strand at 665.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 662,239 + Atu0666 0.30 -0.2 662,247 - Atu0666 0.31 -0.1 662,583 + Atu0666 0.59 +0.1 662,594 - Atu0666 0.60 -0.2 662,712 + Atu0666 0.70 +0.7 662,723 + Atu0666 0.71 -0.4 662,731 - Atu0666 0.71 +0.4 662,763 - Atu0666 0.74 -0.1 662,763 - Atu0666 0.74 +0.3 662,894 + Atu0666 0.85 -0.0 662,934 - Atu0666 0.88 -0.3 663,011 + -0.2 663,081 + -1.4 663,081 + -0.6 663,081 + -0.5 663,081 + -0.6 663,081 + +0.4 663,089 - -0.1 663,089 - +0.2 663,089 - -0.2 663,107 + +0.5 663,193 + -0.8 663,208 - +0.4 663,228 - Atu0667 0.11 -0.1 663,250 - Atu0667 0.12 -0.3 663,310 - Atu0667 0.17 -0.2 663,321 + Atu0667 0.18 -1.3 663,323 + Atu0667 0.18 -0.1 663,346 - Atu0667 0.20 -0.3 663,485 - Atu0667 0.30 -0.0 663,513 + Atu0667 0.32 -0.6 663,526 - Atu0667 0.33 -0.4 663,685 + Atu0667 0.46 -0.2 663,693 - Atu0667 0.46 -0.3 663,743 + Atu0667 0.50 -0.6 663,761 - Atu0667 0.51 -0.0 663,768 - Atu0667 0.52 -0.2 663,786 + Atu0667 0.53 -1.3 663,892 + Atu0667 0.62 +0.1 663,990 + Atu0667 0.69 -0.5 663,998 - Atu0667 0.70 +0.3 663,998 - Atu0667 0.70 -0.5 664,013 + Atu0667 0.71 -0.1 664,013 + Atu0667 0.71 -0.9 664,025 + Atu0667 0.72 +0.3 664,045 - Atu0667 0.73 -0.4 664,078 - Atu0667 0.76 -0.2 664,092 - Atu0667 0.77 +0.3 664,100 - Atu0667 0.77 +1.1 664,154 + Atu0667 0.82 +0.8 664,157 + Atu0667 0.82 -0.7 664,183 + Atu0667 0.84 -0.1 664,225 - Atu0667 0.87 -0.6 664,299 + -0.1 664,299 + -0.6 664,299 + +0.2 664,307 - +1.3 664,322 - +0.0 664,342 + +0.3 664,489 + Atu0668 0.15 -0.4 664,499 - Atu0668 0.17 -1.3 664,507 - Atu0668 0.18 -0.1 664,537 + Atu0668 0.22 +0.1 664,654 - Atu0668 0.40 +0.3 664,654 - Atu0668 0.40 -0.1 664,715 - Atu0668 0.49 -0.5 664,768 + Atu0668 0.57 +0.3 664,784 + Atu0668 0.60 +0.5 664,860 - Atu0668 0.71 -0.5 665,010 + -0.1 665,146 + -0.1 665,177 + -0.6 665,255 + +0.1 665,324 - -0.3
Or see this region's nucleotide sequence