Strain Fitness in Agrobacterium fabrum C58 around Atu0575

Experiment: R2A with silver chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0574 and Atu0575 are separated by 22 nucleotidesAtu0575 and Atu0576 are separated by 3 nucleotides Atu0574: Atu0574 - flagellar hook protein, at 558,938 to 560,215 Atu0574 Atu0575: Atu0575 - flagellar hook associated protein, at 560,238 to 561,716 Atu0575 Atu0576: Atu0576 - flagellar hook-associated protein, at 561,720 to 562,823 Atu0576 Position (kb) 560 561 562Strain fitness (log2 ratio) -1 0 1 2at 559.241 kb on - strand, within Atu0574at 559.241 kb on - strand, within Atu0574at 559.278 kb on + strand, within Atu0574at 559.278 kb on + strand, within Atu0574at 559.326 kb on + strand, within Atu0574at 559.357 kb on - strand, within Atu0574at 559.410 kb on + strand, within Atu0574at 559.413 kb on + strand, within Atu0574at 559.418 kb on - strand, within Atu0574at 559.494 kb on - strand, within Atu0574at 559.534 kb on - strand, within Atu0574at 559.564 kb on + strand, within Atu0574at 559.653 kb on + strand, within Atu0574at 559.675 kb on + strand, within Atu0574at 559.714 kb on + strand, within Atu0574at 559.714 kb on + strand, within Atu0574at 559.714 kb on + strand, within Atu0574at 559.756 kb on + strand, within Atu0574at 559.756 kb on + strand, within Atu0574at 559.756 kb on + strand, within Atu0574at 559.764 kb on - strand, within Atu0574at 559.790 kb on - strand, within Atu0574at 559.798 kb on + strand, within Atu0574at 559.800 kb on - strand, within Atu0574at 559.840 kb on + strand, within Atu0574at 559.862 kb on - strand, within Atu0574at 559.864 kb on + strand, within Atu0574at 559.872 kb on - strand, within Atu0574at 559.958 kb on + strand, within Atu0574at 560.055 kb on + strand, within Atu0574at 560.055 kb on + strand, within Atu0574at 560.055 kb on + strand, within Atu0574at 560.080 kb on + strand, within Atu0574at 560.218 kb on - strandat 560.241 kb on - strandat 560.248 kb on + strandat 560.256 kb on - strandat 560.263 kb on - strandat 560.287 kb on + strandat 560.289 kb on + strandat 560.289 kb on + strandat 560.295 kb on - strandat 560.412 kb on - strand, within Atu0575at 560.414 kb on + strand, within Atu0575at 560.422 kb on - strand, within Atu0575at 560.430 kb on - strand, within Atu0575at 560.449 kb on - strand, within Atu0575at 560.470 kb on + strand, within Atu0575at 560.478 kb on - strand, within Atu0575at 560.478 kb on - strand, within Atu0575at 560.478 kb on - strand, within Atu0575at 560.485 kb on + strand, within Atu0575at 560.488 kb on - strand, within Atu0575at 560.493 kb on - strand, within Atu0575at 560.558 kb on + strand, within Atu0575at 560.581 kb on + strand, within Atu0575at 560.581 kb on + strand, within Atu0575at 560.663 kb on + strand, within Atu0575at 560.675 kb on + strand, within Atu0575at 560.677 kb on + strand, within Atu0575at 560.731 kb on - strand, within Atu0575at 560.752 kb on - strand, within Atu0575at 560.801 kb on - strand, within Atu0575at 560.894 kb on + strand, within Atu0575at 560.916 kb on - strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.926 kb on - strand, within Atu0575at 560.926 kb on - strand, within Atu0575at 560.984 kb on - strand, within Atu0575at 561.104 kb on - strand, within Atu0575at 561.126 kb on + strand, within Atu0575at 561.129 kb on + strand, within Atu0575at 561.192 kb on - strand, within Atu0575at 561.238 kb on + strand, within Atu0575at 561.265 kb on + strand, within Atu0575at 561.273 kb on - strand, within Atu0575at 561.426 kb on + strand, within Atu0575at 561.583 kb on - strandat 561.601 kb on + strandat 561.606 kb on + strandat 561.623 kb on + strandat 561.763 kb on - strandat 561.764 kb on + strandat 561.764 kb on + strandat 561.764 kb on + strandat 561.772 kb on - strandat 561.774 kb on + strandat 561.777 kb on - strandat 561.844 kb on + strand, within Atu0576at 561.882 kb on - strand, within Atu0576at 561.944 kb on + strand, within Atu0576at 561.963 kb on + strand, within Atu0576at 561.971 kb on - strand, within Atu0576at 561.977 kb on + strand, within Atu0576at 562.005 kb on + strand, within Atu0576at 562.013 kb on - strand, within Atu0576at 562.019 kb on + strand, within Atu0576at 562.138 kb on + strand, within Atu0576at 562.201 kb on + strand, within Atu0576at 562.274 kb on + strand, within Atu0576at 562.427 kb on - strand, within Atu0576at 562.483 kb on + strand, within Atu0576

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM
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559,241 - Atu0574 0.24 +0.9
559,241 - Atu0574 0.24 +1.7
559,278 + Atu0574 0.27 +0.4
559,278 + Atu0574 0.27 +0.8
559,326 + Atu0574 0.30 +1.0
559,357 - Atu0574 0.33 +0.9
559,410 + Atu0574 0.37 +0.7
559,413 + Atu0574 0.37 +0.3
559,418 - Atu0574 0.38 +0.7
559,494 - Atu0574 0.44 +1.4
559,534 - Atu0574 0.47 +1.5
559,564 + Atu0574 0.49 +1.2
559,653 + Atu0574 0.56 +0.7
559,675 + Atu0574 0.58 +0.1
559,714 + Atu0574 0.61 +1.3
559,714 + Atu0574 0.61 +1.0
559,714 + Atu0574 0.61 +0.8
559,756 + Atu0574 0.64 +1.6
559,756 + Atu0574 0.64 +0.7
559,756 + Atu0574 0.64 +1.0
559,764 - Atu0574 0.65 +0.2
559,790 - Atu0574 0.67 +0.7
559,798 + Atu0574 0.67 +1.2
559,800 - Atu0574 0.67 +0.8
559,840 + Atu0574 0.71 +1.1
559,862 - Atu0574 0.72 +0.5
559,864 + Atu0574 0.72 +0.9
559,872 - Atu0574 0.73 +0.4
559,958 + Atu0574 0.80 +0.8
560,055 + Atu0574 0.87 +1.1
560,055 + Atu0574 0.87 +1.2
560,055 + Atu0574 0.87 +1.3
560,080 + Atu0574 0.89 +1.3
560,218 - +1.3
560,241 - +1.2
560,248 + +1.5
560,256 - +1.0
560,263 - +1.0
560,287 + +1.0
560,289 + +1.1
560,289 + +1.4
560,295 - +1.3
560,412 - Atu0575 0.12 +0.2
560,414 + Atu0575 0.12 +1.1
560,422 - Atu0575 0.12 +1.1
560,430 - Atu0575 0.13 +1.4
560,449 - Atu0575 0.14 +0.6
560,470 + Atu0575 0.16 +1.6
560,478 - Atu0575 0.16 +1.1
560,478 - Atu0575 0.16 +0.8
560,478 - Atu0575 0.16 +0.8
560,485 + Atu0575 0.17 +0.9
560,488 - Atu0575 0.17 +1.2
560,493 - Atu0575 0.17 +0.8
560,558 + Atu0575 0.22 +1.1
560,581 + Atu0575 0.23 +0.8
560,581 + Atu0575 0.23 +0.8
560,663 + Atu0575 0.29 +1.0
560,675 + Atu0575 0.30 +0.9
560,677 + Atu0575 0.30 +0.8
560,731 - Atu0575 0.33 +1.0
560,752 - Atu0575 0.35 +0.8
560,801 - Atu0575 0.38 +2.0
560,894 + Atu0575 0.44 +1.0
560,916 - Atu0575 0.46 +1.2
560,918 + Atu0575 0.46 +0.8
560,918 + Atu0575 0.46 +1.3
560,918 + Atu0575 0.46 +1.0
560,918 + Atu0575 0.46 +1.1
560,926 - Atu0575 0.47 +1.1
560,926 - Atu0575 0.47 +1.9
560,984 - Atu0575 0.50 +1.0
561,104 - Atu0575 0.59 +1.1
561,126 + Atu0575 0.60 +1.0
561,129 + Atu0575 0.60 +1.2
561,192 - Atu0575 0.65 +0.9
561,238 + Atu0575 0.68 +1.0
561,265 + Atu0575 0.69 +1.7
561,273 - Atu0575 0.70 +0.8
561,426 + Atu0575 0.80 +1.1
561,583 - -0.5
561,601 + +1.2
561,606 + +1.0
561,623 + +1.1
561,763 - +1.2
561,764 + +0.5
561,764 + +1.3
561,764 + +0.9
561,772 - +0.7
561,774 + +1.5
561,777 - +0.4
561,844 + Atu0576 0.11 +0.9
561,882 - Atu0576 0.15 +1.4
561,944 + Atu0576 0.20 +1.0
561,963 + Atu0576 0.22 +0.9
561,971 - Atu0576 0.23 +0.9
561,977 + Atu0576 0.23 +0.9
562,005 + Atu0576 0.26 +0.7
562,013 - Atu0576 0.27 +0.7
562,019 + Atu0576 0.27 +0.7
562,138 + Atu0576 0.38 +1.0
562,201 + Atu0576 0.44 +1.0
562,274 + Atu0576 0.50 +1.2
562,427 - Atu0576 0.64 +1.1
562,483 + Atu0576 0.69 +1.2

Or see this region's nucleotide sequence