Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0570 and Atu0571 overlap by 4 nucleotides Atu0571 and Atu0572 are separated by 70 nucleotides Atu0572 and Atu0573 are separated by 282 nucleotides
Atu0570: Atu0570 - Chemotaxis protein, at 554,738 to 556,018
Atu0570
Atu0571: Atu0571 - chemotaxis MotD protein, at 556,015 to 557,364
Atu0571
Atu0572: Atu0572 - hypothetical protein, at 557,435 to 557,878
Atu0572
Atu0573: Atu0573 - transcriptional regulator, at 558,161 to 558,832
Atu0573
Position (kb) 556
557
558 Strain fitness (log2 ratio) -1
0
1
2
3 at 555.042 kb on + strand, within Atu0570 at 555.042 kb on + strand, within Atu0570 at 555.050 kb on - strand, within Atu0570 at 555.104 kb on - strand, within Atu0570 at 555.145 kb on + strand, within Atu0570 at 555.184 kb on + strand, within Atu0570 at 555.192 kb on - strand, within Atu0570 at 555.261 kb on + strand, within Atu0570 at 555.280 kb on + strand, within Atu0570 at 555.340 kb on - strand, within Atu0570 at 555.368 kb on + strand, within Atu0570 at 555.373 kb on + strand, within Atu0570 at 555.383 kb on - strand, within Atu0570 at 555.479 kb on + strand, within Atu0570 at 555.511 kb on + strand, within Atu0570 at 555.511 kb on + strand, within Atu0570 at 555.616 kb on + strand, within Atu0570 at 555.632 kb on - strand, within Atu0570 at 555.663 kb on + strand, within Atu0570 at 555.690 kb on + strand, within Atu0570 at 555.743 kb on + strand, within Atu0570 at 555.744 kb on - strand, within Atu0570 at 555.744 kb on - strand, within Atu0570 at 555.753 kb on + strand, within Atu0570 at 555.822 kb on - strand, within Atu0570 at 555.841 kb on - strand, within Atu0570 at 556.089 kb on + strand at 556.194 kb on + strand, within Atu0571 at 556.349 kb on - strand, within Atu0571 at 556.440 kb on + strand, within Atu0571 at 556.440 kb on + strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.487 kb on - strand, within Atu0571 at 556.548 kb on + strand, within Atu0571 at 556.556 kb on - strand, within Atu0571 at 556.566 kb on - strand, within Atu0571 at 556.577 kb on - strand, within Atu0571 at 556.587 kb on + strand, within Atu0571 at 556.590 kb on - strand, within Atu0571 at 556.611 kb on + strand, within Atu0571 at 556.710 kb on + strand, within Atu0571 at 556.787 kb on - strand, within Atu0571 at 556.872 kb on + strand, within Atu0571 at 556.872 kb on + strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.892 kb on - strand, within Atu0571 at 556.902 kb on + strand, within Atu0571 at 556.915 kb on + strand, within Atu0571 at 556.915 kb on + strand, within Atu0571 at 556.920 kb on + strand, within Atu0571 at 556.923 kb on - strand, within Atu0571 at 556.940 kb on + strand, within Atu0571 at 556.946 kb on + strand, within Atu0571 at 556.954 kb on - strand, within Atu0571 at 557.106 kb on + strand, within Atu0571 at 557.143 kb on - strand, within Atu0571 at 557.158 kb on + strand, within Atu0571 at 557.313 kb on - strand at 557.342 kb on - strand at 557.354 kb on - strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.393 kb on - strand at 557.393 kb on - strand at 557.397 kb on + strand at 557.405 kb on + strand at 557.505 kb on - strand, within Atu0572 at 557.541 kb on + strand, within Atu0572 at 557.757 kb on + strand, within Atu0572 at 558.190 kb on + strand at 558.198 kb on - strand at 558.198 kb on - strand at 558.271 kb on + strand, within Atu0573 at 558.279 kb on - strand, within Atu0573
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 555,042 + Atu0570 0.24 +1.2 555,042 + Atu0570 0.24 +1.5 555,050 - Atu0570 0.24 +2.0 555,104 - Atu0570 0.29 +0.6 555,145 + Atu0570 0.32 +1.2 555,184 + Atu0570 0.35 +1.3 555,192 - Atu0570 0.35 +1.2 555,261 + Atu0570 0.41 +1.3 555,280 + Atu0570 0.42 +0.9 555,340 - Atu0570 0.47 +1.2 555,368 + Atu0570 0.49 +1.2 555,373 + Atu0570 0.50 +1.2 555,383 - Atu0570 0.50 +0.9 555,479 + Atu0570 0.58 +0.9 555,511 + Atu0570 0.60 +1.0 555,511 + Atu0570 0.60 +1.1 555,616 + Atu0570 0.69 +1.2 555,632 - Atu0570 0.70 +1.1 555,663 + Atu0570 0.72 +1.7 555,690 + Atu0570 0.74 +0.9 555,743 + Atu0570 0.78 +1.0 555,744 - Atu0570 0.79 +1.4 555,744 - Atu0570 0.79 +1.1 555,753 + Atu0570 0.79 +1.3 555,822 - Atu0570 0.85 +0.5 555,841 - Atu0570 0.86 +1.1 556,089 + +1.2 556,194 + Atu0571 0.13 +0.8 556,349 - Atu0571 0.25 +1.1 556,440 + Atu0571 0.31 +1.3 556,440 + Atu0571 0.31 +0.9 556,448 - Atu0571 0.32 +1.6 556,448 - Atu0571 0.32 +1.0 556,448 - Atu0571 0.32 +0.9 556,448 - Atu0571 0.32 +0.9 556,487 - Atu0571 0.35 +1.3 556,548 + Atu0571 0.39 +1.6 556,556 - Atu0571 0.40 +1.4 556,566 - Atu0571 0.41 +0.7 556,577 - Atu0571 0.42 +0.8 556,587 + Atu0571 0.42 +3.6 556,590 - Atu0571 0.43 +1.3 556,611 + Atu0571 0.44 +1.0 556,710 + Atu0571 0.51 +1.2 556,787 - Atu0571 0.57 +1.7 556,872 + Atu0571 0.63 +1.4 556,872 + Atu0571 0.63 +0.8 556,880 - Atu0571 0.64 +1.0 556,880 - Atu0571 0.64 +0.6 556,880 - Atu0571 0.64 +1.0 556,892 - Atu0571 0.65 +1.0 556,902 + Atu0571 0.66 +1.1 556,915 + Atu0571 0.67 +2.5 556,915 + Atu0571 0.67 +1.5 556,920 + Atu0571 0.67 +1.2 556,923 - Atu0571 0.67 +1.0 556,940 + Atu0571 0.69 +1.0 556,946 + Atu0571 0.69 +1.6 556,954 - Atu0571 0.70 +1.4 557,106 + Atu0571 0.81 +1.2 557,143 - Atu0571 0.84 +0.8 557,158 + Atu0571 0.85 +1.1 557,313 - +0.3 557,342 - +1.0 557,354 - +1.5 557,385 + -0.0 557,385 + +0.1 557,385 + +0.1 557,385 + +0.2 557,393 - +0.1 557,393 - +0.5 557,397 + +0.1 557,405 + +0.4 557,505 - Atu0572 0.16 +0.0 557,541 + Atu0572 0.24 +0.1 557,757 + Atu0572 0.73 +1.4 558,190 + +0.9 558,198 - +0.3 558,198 - +0.9 558,271 + Atu0573 0.16 +1.8 558,279 - Atu0573 0.18 +0.3
Or see this region's nucleotide sequence