Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0563 and Atu0564 are separated by 125 nucleotides Atu0564 and Atu0565 are separated by 5 nucleotides Atu0565 and Atu0566 are separated by 80 nucleotides Atu0566 and Atu0567 are separated by 14 nucleotides
Atu0563: Atu0563 - flagellar motor switch protein FliG, at 548,213 to 549,256
Atu0563
Atu0564: Atu0564 - flagellar biosynthetic protein, at 549,382 to 550,464
Atu0564
Atu0565: Atu0565 - hypothetical protein, at 550,470 to 550,907
Atu0565
Atu0566: Atu0566 - hypothetical protein, at 550,988 to 551,200
Atu0566
Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507
Atu0567
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 548.410 kb on - strand, within Atu0563 at 548.471 kb on - strand, within Atu0563 at 548.497 kb on + strand, within Atu0563 at 548.502 kb on + strand, within Atu0563 at 548.510 kb on + strand, within Atu0563 at 548.510 kb on - strand, within Atu0563 at 548.510 kb on - strand, within Atu0563 at 548.520 kb on - strand, within Atu0563 at 548.542 kb on + strand, within Atu0563 at 548.564 kb on + strand, within Atu0563 at 548.578 kb on + strand, within Atu0563 at 548.684 kb on + strand, within Atu0563 at 548.684 kb on + strand, within Atu0563 at 548.725 kb on - strand, within Atu0563 at 548.732 kb on - strand, within Atu0563 at 548.871 kb on - strand, within Atu0563 at 548.871 kb on - strand, within Atu0563 at 548.875 kb on + strand, within Atu0563 at 548.895 kb on - strand, within Atu0563 at 548.959 kb on + strand, within Atu0563 at 548.977 kb on + strand, within Atu0563 at 548.977 kb on + strand, within Atu0563 at 549.024 kb on + strand, within Atu0563 at 549.055 kb on + strand, within Atu0563 at 549.135 kb on - strand, within Atu0563 at 549.275 kb on + strand at 549.396 kb on + strand at 549.396 kb on + strand at 549.397 kb on + strand at 549.405 kb on - strand at 549.413 kb on - strand at 549.608 kb on - strand, within Atu0564 at 549.628 kb on - strand, within Atu0564 at 549.650 kb on - strand, within Atu0564 at 549.715 kb on + strand, within Atu0564 at 549.715 kb on + strand, within Atu0564 at 549.803 kb on - strand, within Atu0564 at 549.820 kb on - strand, within Atu0564 at 549.989 kb on - strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.059 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.076 kb on + strand, within Atu0564 at 550.092 kb on + strand, within Atu0564 at 550.104 kb on + strand, within Atu0564 at 550.182 kb on + strand, within Atu0564 at 550.203 kb on + strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.272 kb on - strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.400 kb on + strand at 550.402 kb on + strand at 550.468 kb on - strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.505 kb on + strand at 550.585 kb on - strand, within Atu0565 at 550.639 kb on - strand, within Atu0565 at 550.782 kb on - strand, within Atu0565 at 550.848 kb on + strand, within Atu0565 at 550.867 kb on - strand at 550.890 kb on - strand at 550.895 kb on - strand at 550.985 kb on + strand at 551.002 kb on + strand at 551.004 kb on - strand at 551.075 kb on - strand, within Atu0566 at 551.133 kb on - strand, within Atu0566 at 551.232 kb on - strand at 551.241 kb on + strand at 551.283 kb on - strand at 551.293 kb on + strand at 551.368 kb on + strand, within Atu0567 at 551.406 kb on - strand, within Atu0567 at 551.411 kb on + strand, within Atu0567 at 551.441 kb on - strand, within Atu0567 at 551.463 kb on - strand, within Atu0567
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 548,410 - Atu0563 0.19 +1.2 548,471 - Atu0563 0.25 +1.3 548,497 + Atu0563 0.27 +0.4 548,502 + Atu0563 0.28 +2.1 548,510 + Atu0563 0.28 +0.8 548,510 - Atu0563 0.28 +1.6 548,510 - Atu0563 0.28 +0.7 548,520 - Atu0563 0.29 +1.1 548,542 + Atu0563 0.32 +1.2 548,564 + Atu0563 0.34 +1.3 548,578 + Atu0563 0.35 +0.9 548,684 + Atu0563 0.45 +2.5 548,684 + Atu0563 0.45 +1.3 548,725 - Atu0563 0.49 +1.1 548,732 - Atu0563 0.50 +1.1 548,871 - Atu0563 0.63 +1.2 548,871 - Atu0563 0.63 +1.5 548,875 + Atu0563 0.63 +0.8 548,895 - Atu0563 0.65 +0.6 548,959 + Atu0563 0.71 +1.4 548,977 + Atu0563 0.73 +1.3 548,977 + Atu0563 0.73 +1.6 549,024 + Atu0563 0.78 +1.4 549,055 + Atu0563 0.81 +1.1 549,135 - Atu0563 0.88 +1.6 549,275 + -0.1 549,396 + +0.2 549,396 + +0.7 549,397 + +0.9 549,405 - +1.8 549,413 - +0.8 549,608 - Atu0564 0.21 +0.9 549,628 - Atu0564 0.23 +0.9 549,650 - Atu0564 0.25 +1.5 549,715 + Atu0564 0.31 +0.9 549,715 + Atu0564 0.31 -0.3 549,803 - Atu0564 0.39 +1.5 549,820 - Atu0564 0.40 +1.5 549,989 - Atu0564 0.56 +1.3 550,034 + Atu0564 0.60 +1.3 550,034 + Atu0564 0.60 +1.2 550,059 + Atu0564 0.63 +1.1 550,075 + Atu0564 0.64 +0.6 550,075 + Atu0564 0.64 +3.0 550,076 + Atu0564 0.64 +0.6 550,092 + Atu0564 0.66 +2.5 550,104 + Atu0564 0.67 +1.0 550,182 + Atu0564 0.74 +1.1 550,203 + Atu0564 0.76 +1.3 550,221 - Atu0564 0.77 +0.9 550,221 - Atu0564 0.77 +0.9 550,272 - Atu0564 0.82 +0.9 550,347 + Atu0564 0.89 +1.1 550,347 + Atu0564 0.89 +1.1 550,400 + -0.0 550,402 + +1.9 550,468 - -0.2 550,486 + -0.3 550,486 + -0.4 550,486 + -0.3 550,505 + -1.1 550,585 - Atu0565 0.26 -0.3 550,639 - Atu0565 0.39 +0.0 550,782 - Atu0565 0.71 +0.5 550,848 + Atu0565 0.86 -0.7 550,867 - -0.6 550,890 - +0.5 550,895 - -0.2 550,985 + -0.4 551,002 + +0.8 551,004 - -0.4 551,075 - Atu0566 0.41 +0.1 551,133 - Atu0566 0.68 +0.6 551,232 - -0.4 551,241 + -0.5 551,283 - -0.6 551,293 + -2.8 551,368 + Atu0567 0.12 -0.1 551,406 - Atu0567 0.15 -0.1 551,411 + Atu0567 0.15 -0.7 551,441 - Atu0567 0.17 +0.3 551,463 - Atu0567 0.19 +0.6
Or see this region's nucleotide sequence