Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0560 and Atu0561 are separated by 2 nucleotides Atu0561 and Atu0562 are separated by 63 nucleotides Atu0562 and Atu0563 are separated by 27 nucleotides
Atu0560: Atu0560 - flagellar motor protein, at 545,748 to 546,620
Atu0560
Atu0561: Atu0561 - flagellar motor switch protein, at 546,623 to 547,582
Atu0561
Atu0562: Atu0562 - flagellar motor switch protein FliN, at 547,646 to 548,185
Atu0562
Atu0563: Atu0563 - flagellar motor switch protein FliG, at 548,213 to 549,256
Atu0563
Position (kb) 546
547
548 Strain fitness (log2 ratio) -1
0
1
2 at 545.653 kb on + strand at 545.653 kb on + strand at 545.653 kb on + strand at 545.665 kb on + strand at 545.672 kb on + strand at 545.727 kb on - strand at 545.727 kb on - strand at 545.729 kb on + strand at 545.729 kb on + strand at 545.735 kb on - strand at 545.774 kb on - strand at 545.817 kb on + strand at 545.887 kb on + strand, within Atu0560 at 545.895 kb on - strand, within Atu0560 at 545.904 kb on + strand, within Atu0560 at 545.930 kb on + strand, within Atu0560 at 545.993 kb on + strand, within Atu0560 at 546.016 kb on + strand, within Atu0560 at 546.227 kb on + strand, within Atu0560 at 546.299 kb on + strand, within Atu0560 at 546.299 kb on + strand, within Atu0560 at 546.363 kb on - strand, within Atu0560 at 546.363 kb on - strand, within Atu0560 at 546.377 kb on + strand, within Atu0560 at 546.387 kb on + strand, within Atu0560 at 546.395 kb on - strand, within Atu0560 at 546.420 kb on + strand, within Atu0560 at 546.425 kb on + strand, within Atu0560 at 546.425 kb on + strand, within Atu0560 at 546.425 kb on + strand, within Atu0560 at 546.433 kb on - strand, within Atu0560 at 546.433 kb on - strand, within Atu0560 at 546.433 kb on - strand, within Atu0560 at 546.444 kb on + strand, within Atu0560 at 546.444 kb on + strand, within Atu0560 at 546.455 kb on + strand, within Atu0560 at 546.661 kb on - strand at 546.685 kb on + strand at 546.717 kb on - strand at 546.732 kb on - strand, within Atu0561 at 546.992 kb on + strand, within Atu0561 at 547.037 kb on + strand, within Atu0561 at 547.045 kb on - strand, within Atu0561 at 547.058 kb on + strand, within Atu0561 at 547.058 kb on + strand, within Atu0561 at 547.066 kb on - strand, within Atu0561 at 547.097 kb on - strand, within Atu0561 at 547.112 kb on - strand, within Atu0561 at 547.230 kb on - strand, within Atu0561 at 547.243 kb on + strand, within Atu0561 at 547.251 kb on - strand, within Atu0561 at 547.251 kb on - strand, within Atu0561 at 547.335 kb on - strand, within Atu0561 at 547.335 kb on - strand, within Atu0561 at 547.347 kb on + strand, within Atu0561 at 547.347 kb on + strand, within Atu0561 at 547.473 kb on + strand, within Atu0561 at 547.473 kb on + strand, within Atu0561 at 547.473 kb on + strand, within Atu0561 at 547.578 kb on + strand at 547.578 kb on + strand at 547.632 kb on + strand at 547.728 kb on - strand, within Atu0562 at 547.823 kb on + strand, within Atu0562 at 547.909 kb on + strand, within Atu0562 at 547.909 kb on - strand, within Atu0562 at 548.050 kb on + strand, within Atu0562 at 548.094 kb on + strand, within Atu0562 at 548.117 kb on + strand, within Atu0562 at 548.204 kb on + strand at 548.207 kb on - strand at 548.299 kb on + strand at 548.369 kb on + strand, within Atu0563 at 548.410 kb on - strand, within Atu0563 at 548.471 kb on - strand, within Atu0563 at 548.497 kb on + strand, within Atu0563 at 548.502 kb on + strand, within Atu0563 at 548.510 kb on + strand, within Atu0563 at 548.510 kb on - strand, within Atu0563 at 548.510 kb on - strand, within Atu0563 at 548.520 kb on - strand, within Atu0563 at 548.542 kb on + strand, within Atu0563 at 548.564 kb on + strand, within Atu0563 at 548.578 kb on + strand, within Atu0563
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 545,653 + -0.4 545,653 + +0.2 545,653 + +2.1 545,665 + +0.2 545,672 + -0.2 545,727 - +1.8 545,727 - +0.9 545,729 + +0.7 545,729 + +1.0 545,735 - +0.1 545,774 - +1.1 545,817 + +0.8 545,887 + Atu0560 0.16 +1.0 545,895 - Atu0560 0.17 +0.6 545,904 + Atu0560 0.18 +1.4 545,930 + Atu0560 0.21 +0.9 545,993 + Atu0560 0.28 +1.4 546,016 + Atu0560 0.31 +1.2 546,227 + Atu0560 0.55 +1.5 546,299 + Atu0560 0.63 +1.6 546,299 + Atu0560 0.63 +0.5 546,363 - Atu0560 0.70 +0.2 546,363 - Atu0560 0.70 +1.4 546,377 + Atu0560 0.72 +1.4 546,387 + Atu0560 0.73 +1.3 546,395 - Atu0560 0.74 +0.3 546,420 + Atu0560 0.77 +1.2 546,425 + Atu0560 0.78 +0.8 546,425 + Atu0560 0.78 +1.5 546,425 + Atu0560 0.78 +1.1 546,433 - Atu0560 0.78 +0.7 546,433 - Atu0560 0.78 +1.2 546,433 - Atu0560 0.78 +1.0 546,444 + Atu0560 0.80 +1.2 546,444 + Atu0560 0.80 +1.0 546,455 + Atu0560 0.81 +0.9 546,661 - +1.1 546,685 + +1.1 546,717 - +0.9 546,732 - Atu0561 0.11 +1.0 546,992 + Atu0561 0.38 -0.1 547,037 + Atu0561 0.43 +1.9 547,045 - Atu0561 0.44 +1.4 547,058 + Atu0561 0.45 +1.4 547,058 + Atu0561 0.45 +1.4 547,066 - Atu0561 0.46 +1.8 547,097 - Atu0561 0.49 +1.0 547,112 - Atu0561 0.51 +1.0 547,230 - Atu0561 0.63 +2.3 547,243 + Atu0561 0.65 +1.4 547,251 - Atu0561 0.65 +1.4 547,251 - Atu0561 0.65 +0.6 547,335 - Atu0561 0.74 +1.3 547,335 - Atu0561 0.74 +1.1 547,347 + Atu0561 0.75 +1.2 547,347 + Atu0561 0.75 +1.2 547,473 + Atu0561 0.89 +1.2 547,473 + Atu0561 0.89 +0.7 547,473 + Atu0561 0.89 +1.2 547,578 + +0.0 547,578 + +0.0 547,632 + +1.0 547,728 - Atu0562 0.15 +1.3 547,823 + Atu0562 0.33 +1.5 547,909 + Atu0562 0.49 -0.9 547,909 - Atu0562 0.49 +0.4 548,050 + Atu0562 0.75 +1.0 548,094 + Atu0562 0.83 +0.5 548,117 + Atu0562 0.87 +1.8 548,204 + -0.2 548,207 - +1.1 548,299 + +1.3 548,369 + Atu0563 0.15 +1.3 548,410 - Atu0563 0.19 +1.2 548,471 - Atu0563 0.25 +1.3 548,497 + Atu0563 0.27 +0.4 548,502 + Atu0563 0.28 +2.1 548,510 + Atu0563 0.28 +0.8 548,510 - Atu0563 0.28 +1.6 548,510 - Atu0563 0.28 +0.7 548,520 - Atu0563 0.29 +1.1 548,542 + Atu0563 0.32 +1.2 548,564 + Atu0563 0.34 +1.3 548,578 + Atu0563 0.35 +0.9
Or see this region's nucleotide sequence