Strain Fitness in Agrobacterium fabrum C58 around Atu0560

Experiment: R2A with silver chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0558 and Atu0559 are separated by 1 nucleotidesAtu0559 and Atu0560 are separated by 330 nucleotidesAtu0560 and Atu0561 are separated by 2 nucleotides Atu0558: Atu0558 - flagellar basal body rod protein, at 544,046 to 544,780 Atu0558 Atu0559: Atu0559 - hypothetical protein, at 544,782 to 545,417 Atu0559 Atu0560: Atu0560 - flagellar motor protein, at 545,748 to 546,620 Atu0560 Atu0561: Atu0561 - flagellar motor switch protein, at 546,623 to 547,582 Atu0561 Position (kb) 545 546 547Strain fitness (log2 ratio) -1 0 1 2at 544.754 kb on - strandat 544.777 kb on + strandat 544.823 kb on + strandat 544.832 kb on - strandat 544.890 kb on + strand, within Atu0559at 544.982 kb on - strand, within Atu0559at 545.038 kb on - strand, within Atu0559at 545.145 kb on - strand, within Atu0559at 545.182 kb on - strand, within Atu0559at 545.232 kb on + strand, within Atu0559at 545.289 kb on - strand, within Atu0559at 545.324 kb on - strand, within Atu0559at 545.325 kb on + strand, within Atu0559at 545.325 kb on + strand, within Atu0559at 545.325 kb on + strand, within Atu0559at 545.333 kb on - strand, within Atu0559at 545.348 kb on + strand, within Atu0559at 545.358 kb on + strandat 545.366 kb on + strandat 545.366 kb on - strandat 545.367 kb on - strandat 545.374 kb on - strandat 545.381 kb on - strandat 545.410 kb on - strandat 545.470 kb on - strandat 545.497 kb on - strandat 545.515 kb on + strandat 545.542 kb on - strandat 545.555 kb on + strandat 545.653 kb on + strandat 545.653 kb on + strandat 545.653 kb on + strandat 545.665 kb on + strandat 545.672 kb on + strandat 545.727 kb on - strandat 545.727 kb on - strandat 545.729 kb on + strandat 545.729 kb on + strandat 545.735 kb on - strandat 545.774 kb on - strandat 545.817 kb on + strandat 545.887 kb on + strand, within Atu0560at 545.895 kb on - strand, within Atu0560at 545.904 kb on + strand, within Atu0560at 545.930 kb on + strand, within Atu0560at 545.993 kb on + strand, within Atu0560at 546.016 kb on + strand, within Atu0560at 546.227 kb on + strand, within Atu0560at 546.299 kb on + strand, within Atu0560at 546.299 kb on + strand, within Atu0560at 546.363 kb on - strand, within Atu0560at 546.363 kb on - strand, within Atu0560at 546.377 kb on + strand, within Atu0560at 546.387 kb on + strand, within Atu0560at 546.395 kb on - strand, within Atu0560at 546.420 kb on + strand, within Atu0560at 546.425 kb on + strand, within Atu0560at 546.425 kb on + strand, within Atu0560at 546.425 kb on + strand, within Atu0560at 546.433 kb on - strand, within Atu0560at 546.433 kb on - strand, within Atu0560at 546.433 kb on - strand, within Atu0560at 546.444 kb on + strand, within Atu0560at 546.444 kb on + strand, within Atu0560at 546.455 kb on + strand, within Atu0560at 546.661 kb on - strandat 546.685 kb on + strandat 546.717 kb on - strandat 546.732 kb on - strand, within Atu0561at 546.992 kb on + strand, within Atu0561at 547.037 kb on + strand, within Atu0561at 547.045 kb on - strand, within Atu0561at 547.058 kb on + strand, within Atu0561at 547.058 kb on + strand, within Atu0561at 547.066 kb on - strand, within Atu0561at 547.097 kb on - strand, within Atu0561at 547.112 kb on - strand, within Atu0561at 547.230 kb on - strand, within Atu0561at 547.243 kb on + strand, within Atu0561at 547.251 kb on - strand, within Atu0561at 547.251 kb on - strand, within Atu0561at 547.335 kb on - strand, within Atu0561at 547.335 kb on - strand, within Atu0561at 547.347 kb on + strand, within Atu0561at 547.347 kb on + strand, within Atu0561at 547.473 kb on + strand, within Atu0561at 547.473 kb on + strand, within Atu0561at 547.473 kb on + strand, within Atu0561at 547.578 kb on + strandat 547.578 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM
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544,754 - +1.2
544,777 + +1.2
544,823 + +0.6
544,832 - +0.4
544,890 + Atu0559 0.17 +0.9
544,982 - Atu0559 0.31 +0.1
545,038 - Atu0559 0.40 +1.1
545,145 - Atu0559 0.57 +0.9
545,182 - Atu0559 0.63 +0.8
545,232 + Atu0559 0.71 +0.8
545,289 - Atu0559 0.80 +1.4
545,324 - Atu0559 0.85 +0.7
545,325 + Atu0559 0.85 +1.1
545,325 + Atu0559 0.85 +0.9
545,325 + Atu0559 0.85 +1.0
545,333 - Atu0559 0.87 +0.4
545,348 + Atu0559 0.89 +0.7
545,358 + +0.7
545,366 + +0.8
545,366 - +0.5
545,367 - -1.6
545,374 - +0.6
545,381 - +1.0
545,410 - +2.2
545,470 - +2.0
545,497 - +0.8
545,515 + +1.1
545,542 - +1.5
545,555 + +1.4
545,653 + -0.4
545,653 + +0.2
545,653 + +2.1
545,665 + +0.2
545,672 + -0.2
545,727 - +1.8
545,727 - +0.9
545,729 + +0.7
545,729 + +1.0
545,735 - +0.1
545,774 - +1.1
545,817 + +0.8
545,887 + Atu0560 0.16 +1.0
545,895 - Atu0560 0.17 +0.6
545,904 + Atu0560 0.18 +1.4
545,930 + Atu0560 0.21 +0.9
545,993 + Atu0560 0.28 +1.4
546,016 + Atu0560 0.31 +1.2
546,227 + Atu0560 0.55 +1.5
546,299 + Atu0560 0.63 +1.6
546,299 + Atu0560 0.63 +0.5
546,363 - Atu0560 0.70 +0.2
546,363 - Atu0560 0.70 +1.4
546,377 + Atu0560 0.72 +1.4
546,387 + Atu0560 0.73 +1.3
546,395 - Atu0560 0.74 +0.3
546,420 + Atu0560 0.77 +1.2
546,425 + Atu0560 0.78 +0.8
546,425 + Atu0560 0.78 +1.5
546,425 + Atu0560 0.78 +1.1
546,433 - Atu0560 0.78 +0.7
546,433 - Atu0560 0.78 +1.2
546,433 - Atu0560 0.78 +1.0
546,444 + Atu0560 0.80 +1.2
546,444 + Atu0560 0.80 +1.0
546,455 + Atu0560 0.81 +0.9
546,661 - +1.1
546,685 + +1.1
546,717 - +0.9
546,732 - Atu0561 0.11 +1.0
546,992 + Atu0561 0.38 -0.1
547,037 + Atu0561 0.43 +1.9
547,045 - Atu0561 0.44 +1.4
547,058 + Atu0561 0.45 +1.4
547,058 + Atu0561 0.45 +1.4
547,066 - Atu0561 0.46 +1.8
547,097 - Atu0561 0.49 +1.0
547,112 - Atu0561 0.51 +1.0
547,230 - Atu0561 0.63 +2.3
547,243 + Atu0561 0.65 +1.4
547,251 - Atu0561 0.65 +1.4
547,251 - Atu0561 0.65 +0.6
547,335 - Atu0561 0.74 +1.3
547,335 - Atu0561 0.74 +1.1
547,347 + Atu0561 0.75 +1.2
547,347 + Atu0561 0.75 +1.2
547,473 + Atu0561 0.89 +1.2
547,473 + Atu0561 0.89 +0.7
547,473 + Atu0561 0.89 +1.2
547,578 + +0.0
547,578 + +0.0

Or see this region's nucleotide sequence