Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0550 and Atu0551 overlap by 4 nucleotides Atu0551 and Atu0552 are separated by 20 nucleotides Atu0552 and Atu0553 are separated by 18 nucleotides
Atu0550: Atu0550 - flagellar P-ring protein precursor, at 538,290 to 539,411
Atu0550
Atu0551: Atu0551 - flagellar protein FLGA precursor, at 539,408 to 539,896
Atu0551
Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705
Atu0552
Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062
Atu0553
Position (kb) 539
540 Strain fitness (log2 ratio) -1
0
1
2 at 538.430 kb on + strand, within Atu0550 at 538.506 kb on - strand, within Atu0550 at 538.525 kb on + strand, within Atu0550 at 538.532 kb on + strand, within Atu0550 at 538.555 kb on - strand, within Atu0550 at 538.562 kb on - strand, within Atu0550 at 538.565 kb on + strand, within Atu0550 at 538.598 kb on - strand, within Atu0550 at 538.633 kb on + strand, within Atu0550 at 538.685 kb on + strand, within Atu0550 at 538.685 kb on + strand, within Atu0550 at 538.693 kb on - strand, within Atu0550 at 538.770 kb on + strand, within Atu0550 at 538.771 kb on - strand, within Atu0550 at 538.917 kb on - strand, within Atu0550 at 538.946 kb on - strand, within Atu0550 at 538.984 kb on + strand, within Atu0550 at 538.984 kb on + strand, within Atu0550 at 538.992 kb on - strand, within Atu0550 at 538.992 kb on - strand, within Atu0550 at 539.017 kb on + strand, within Atu0550 at 539.025 kb on - strand, within Atu0550 at 539.075 kb on + strand, within Atu0550 at 539.076 kb on - strand, within Atu0550 at 539.087 kb on + strand, within Atu0550 at 539.095 kb on - strand, within Atu0550 at 539.146 kb on + strand, within Atu0550 at 539.146 kb on + strand, within Atu0550 at 539.154 kb on - strand, within Atu0550 at 539.154 kb on - strand, within Atu0550 at 539.197 kb on + strand, within Atu0550 at 539.205 kb on - strand, within Atu0550 at 539.207 kb on - strand, within Atu0550 at 539.255 kb on - strand, within Atu0550 at 539.262 kb on - strand, within Atu0550 at 539.329 kb on + strand at 539.337 kb on - strand at 539.361 kb on + strand at 539.366 kb on + strand at 539.366 kb on + strand at 539.384 kb on - strand at 539.430 kb on + strand at 539.438 kb on + strand at 539.446 kb on - strand at 539.480 kb on + strand, within Atu0551 at 539.572 kb on + strand, within Atu0551 at 539.580 kb on - strand, within Atu0551 at 539.675 kb on + strand, within Atu0551 at 539.758 kb on + strand, within Atu0551 at 539.852 kb on + strand at 539.874 kb on + strand at 539.899 kb on - strand at 539.962 kb on + strand at 540.037 kb on + strand, within Atu0552 at 540.059 kb on + strand, within Atu0552 at 540.243 kb on - strand, within Atu0552 at 540.265 kb on - strand, within Atu0552 at 540.369 kb on + strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.417 kb on + strand, within Atu0552 at 540.461 kb on + strand, within Atu0552 at 540.467 kb on - strand, within Atu0552 at 540.541 kb on + strand, within Atu0552 at 540.583 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.625 kb on - strand, within Atu0552 at 540.648 kb on + strand at 540.698 kb on + strand at 540.722 kb on + strand at 540.724 kb on - strand at 540.744 kb on + strand at 540.744 kb on + strand at 540.865 kb on - strand, within Atu0553
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 538,430 + Atu0550 0.12 +1.1 538,506 - Atu0550 0.19 +1.3 538,525 + Atu0550 0.21 +1.3 538,532 + Atu0550 0.22 +1.3 538,555 - Atu0550 0.24 +0.9 538,562 - Atu0550 0.24 +1.2 538,565 + Atu0550 0.25 +0.9 538,598 - Atu0550 0.27 +0.7 538,633 + Atu0550 0.31 +1.2 538,685 + Atu0550 0.35 +1.0 538,685 + Atu0550 0.35 +0.9 538,693 - Atu0550 0.36 +0.9 538,770 + Atu0550 0.43 +1.2 538,771 - Atu0550 0.43 +1.3 538,917 - Atu0550 0.56 +1.6 538,946 - Atu0550 0.58 +0.9 538,984 + Atu0550 0.62 +0.6 538,984 + Atu0550 0.62 +0.5 538,992 - Atu0550 0.63 +0.9 538,992 - Atu0550 0.63 +0.6 539,017 + Atu0550 0.65 +1.3 539,025 - Atu0550 0.66 +1.2 539,075 + Atu0550 0.70 +0.9 539,076 - Atu0550 0.70 +1.3 539,087 + Atu0550 0.71 +1.6 539,095 - Atu0550 0.72 +0.8 539,146 + Atu0550 0.76 +1.1 539,146 + Atu0550 0.76 +1.0 539,154 - Atu0550 0.77 +1.6 539,154 - Atu0550 0.77 +1.5 539,197 + Atu0550 0.81 +1.1 539,205 - Atu0550 0.82 +1.2 539,207 - Atu0550 0.82 +1.2 539,255 - Atu0550 0.86 +1.2 539,262 - Atu0550 0.87 +1.5 539,329 + +1.6 539,337 - +1.0 539,361 + +0.9 539,366 + +1.0 539,366 + +0.8 539,384 - +1.4 539,430 + +0.7 539,438 + +0.8 539,446 - +1.0 539,480 + Atu0551 0.15 +1.2 539,572 + Atu0551 0.34 +1.4 539,580 - Atu0551 0.35 +0.5 539,675 + Atu0551 0.55 +0.9 539,758 + Atu0551 0.72 +2.4 539,852 + +1.9 539,874 + +1.1 539,899 - +1.1 539,962 + +1.0 540,037 + Atu0552 0.15 +1.1 540,059 + Atu0552 0.18 +1.0 540,243 - Atu0552 0.41 +1.0 540,265 - Atu0552 0.44 +2.3 540,369 + Atu0552 0.57 +0.6 540,411 - Atu0552 0.63 +0.7 540,411 - Atu0552 0.63 -1.0 540,417 + Atu0552 0.63 +0.7 540,461 + Atu0552 0.69 +1.4 540,467 - Atu0552 0.70 +0.9 540,541 + Atu0552 0.79 +1.0 540,583 + Atu0552 0.84 +1.3 540,617 + Atu0552 0.89 +0.3 540,617 + Atu0552 0.89 +0.9 540,625 - Atu0552 0.90 +1.1 540,648 + +1.1 540,698 + +1.5 540,722 + +0.8 540,724 - +0.6 540,744 + +1.0 540,744 + +1.0 540,865 - Atu0553 0.42 +0.9
Or see this region's nucleotide sequence