Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0545 and Atu0546 are separated by 371 nucleotides Atu0546 and Atu0547 overlap by 4 nucleotides Atu0547 and Atu0548 are separated by 26 nucleotides
Atu0545: Atu0545 - flagella associated protein, at 534,488 to 535,408
Atu0545
Atu0546: Atu0546 - flagellar biosynthetic protein, at 535,780 to 536,517
Atu0546
Atu0547: Atu0547 - flagellar protein, at 536,514 to 537,014
Atu0547
Atu0548: Atu0548 - flagellar L-ring protein precursor, at 537,041 to 537,760
Atu0548
Position (kb) 535
536
537 Strain fitness (log2 ratio) -1
0
1
2 at 534.891 kb on + strand, within Atu0545 at 535.103 kb on + strand, within Atu0545 at 535.182 kb on + strand, within Atu0545 at 535.200 kb on + strand, within Atu0545 at 535.205 kb on + strand, within Atu0545 at 535.208 kb on - strand, within Atu0545 at 535.208 kb on - strand, within Atu0545 at 535.222 kb on - strand, within Atu0545 at 535.291 kb on - strand, within Atu0545 at 535.317 kb on + strand at 535.361 kb on + strand at 535.369 kb on - strand at 535.446 kb on + strand at 535.768 kb on + strand at 535.776 kb on - strand at 535.823 kb on - strand at 535.894 kb on - strand, within Atu0546 at 535.903 kb on + strand, within Atu0546 at 536.025 kb on - strand, within Atu0546 at 536.148 kb on + strand, within Atu0546 at 536.231 kb on - strand, within Atu0546 at 536.239 kb on - strand, within Atu0546 at 536.339 kb on + strand, within Atu0546 at 536.372 kb on + strand, within Atu0546 at 536.380 kb on - strand, within Atu0546 at 536.405 kb on + strand, within Atu0546 at 536.429 kb on + strand, within Atu0546 at 536.543 kb on + strand at 536.543 kb on - strand at 536.685 kb on - strand, within Atu0547 at 536.740 kb on - strand, within Atu0547 at 536.743 kb on + strand, within Atu0547 at 536.743 kb on + strand, within Atu0547 at 536.749 kb on + strand, within Atu0547 at 536.749 kb on + strand, within Atu0547 at 536.757 kb on - strand, within Atu0547 at 536.783 kb on + strand, within Atu0547 at 536.786 kb on - strand, within Atu0547 at 536.791 kb on - strand, within Atu0547 at 536.934 kb on - strand, within Atu0547 at 536.944 kb on - strand, within Atu0547 at 536.944 kb on - strand, within Atu0547 at 536.962 kb on + strand, within Atu0547 at 536.962 kb on + strand, within Atu0547 at 536.969 kb on - strand at 536.975 kb on - strand at 536.992 kb on + strand at 537.015 kb on + strand at 537.016 kb on + strand at 537.021 kb on + strand at 537.024 kb on - strand at 537.048 kb on + strand at 537.058 kb on + strand at 537.058 kb on + strand at 537.233 kb on + strand, within Atu0548 at 537.304 kb on + strand, within Atu0548 at 537.320 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.333 kb on + strand, within Atu0548 at 537.333 kb on + strand, within Atu0548 at 537.335 kb on - strand, within Atu0548 at 537.341 kb on - strand, within Atu0548 at 537.351 kb on - strand, within Atu0548 at 537.422 kb on + strand, within Atu0548 at 537.494 kb on - strand, within Atu0548
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 534,891 + Atu0545 0.44 +0.8 535,103 + Atu0545 0.67 +1.0 535,182 + Atu0545 0.75 +1.0 535,200 + Atu0545 0.77 +1.5 535,205 + Atu0545 0.78 +0.9 535,208 - Atu0545 0.78 +1.9 535,208 - Atu0545 0.78 +1.3 535,222 - Atu0545 0.80 +1.0 535,291 - Atu0545 0.87 +1.3 535,317 + +1.6 535,361 + +1.7 535,369 - +1.5 535,446 + +1.4 535,768 + -0.4 535,776 - -1.1 535,823 - +1.1 535,894 - Atu0546 0.15 +1.0 535,903 + Atu0546 0.17 +0.7 536,025 - Atu0546 0.33 +1.2 536,148 + Atu0546 0.50 +1.0 536,231 - Atu0546 0.61 +1.2 536,239 - Atu0546 0.62 +1.2 536,339 + Atu0546 0.76 +1.2 536,372 + Atu0546 0.80 +0.3 536,380 - Atu0546 0.81 +0.8 536,405 + Atu0546 0.85 +0.9 536,429 + Atu0546 0.88 +0.5 536,543 + +1.3 536,543 - +0.2 536,685 - Atu0547 0.34 +1.3 536,740 - Atu0547 0.45 +1.2 536,743 + Atu0547 0.46 +0.7 536,743 + Atu0547 0.46 +1.7 536,749 + Atu0547 0.47 +1.0 536,749 + Atu0547 0.47 +1.5 536,757 - Atu0547 0.49 +1.3 536,783 + Atu0547 0.54 +1.1 536,786 - Atu0547 0.54 +1.4 536,791 - Atu0547 0.55 +1.1 536,934 - Atu0547 0.84 +1.4 536,944 - Atu0547 0.86 +2.1 536,944 - Atu0547 0.86 +1.5 536,962 + Atu0547 0.89 +1.2 536,962 + Atu0547 0.89 +1.3 536,969 - -0.0 536,975 - +1.6 536,992 + +1.0 537,015 + +1.1 537,016 + +1.2 537,021 + +1.1 537,024 - +0.0 537,048 + +1.2 537,058 + +0.7 537,058 + +2.0 537,233 + Atu0548 0.27 +0.6 537,304 + Atu0548 0.37 +1.0 537,320 + Atu0548 0.39 +1.3 537,327 + Atu0548 0.40 +0.9 537,327 + Atu0548 0.40 +1.2 537,327 + Atu0548 0.40 +1.0 537,327 + Atu0548 0.40 +0.3 537,333 + Atu0548 0.41 +1.0 537,333 + Atu0548 0.41 +1.0 537,335 - Atu0548 0.41 +1.0 537,341 - Atu0548 0.42 +0.7 537,351 - Atu0548 0.43 +0.9 537,422 + Atu0548 0.53 +1.1 537,494 - Atu0548 0.63 +1.0
Or see this region's nucleotide sequence