Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0517 and Atu0518 are separated by 13 nucleotides Atu0518 and Atu0519 overlap by 4 nucleotides Atu0519 and Atu0520 overlap by 1 nucleotides Atu0520 and Atu0521 overlap by 4 nucleotides Atu0521 and Atu0522 are separated by 14 nucleotides
Atu0517: Atu0517 - Chemotaxis protein histidine kinase, at 506,474 to 508,687
Atu0517
Atu0518: Atu0518 - chemotaxis methyltransferase, at 508,701 to 509,609
Atu0518
Atu0519: Atu0519 - protein-glutamate methylesterase, at 509,606 to 510,661
Atu0519
Atu0520: Atu0520 - chemotaxis receiver protein, at 510,661 to 511,050
Atu0520
Atu0521: Atu0521 - methyl-accepting chemotaxis protein, at 511,047 to 511,592
Atu0521
Atu0522: Atu0522 - hypothetical protein, at 511,607 to 511,990
Atu0522
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1
2 at 508.686 kb on + strand at 508.693 kb on + strand at 508.813 kb on - strand, within Atu0518 at 508.845 kb on - strand, within Atu0518 at 508.928 kb on - strand, within Atu0518 at 509.027 kb on - strand, within Atu0518 at 509.034 kb on + strand, within Atu0518 at 509.076 kb on + strand, within Atu0518 at 509.211 kb on + strand, within Atu0518 at 509.224 kb on - strand, within Atu0518 at 509.268 kb on - strand, within Atu0518 at 509.350 kb on + strand, within Atu0518 at 509.357 kb on - strand, within Atu0518 at 509.421 kb on + strand, within Atu0518 at 509.450 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.544 kb on + strand at 509.603 kb on + strand at 509.611 kb on - strand at 509.662 kb on + strand at 509.674 kb on + strand at 509.682 kb on - strand at 509.722 kb on + strand, within Atu0519 at 509.826 kb on - strand, within Atu0519 at 509.937 kb on + strand, within Atu0519 at 509.974 kb on + strand, within Atu0519 at 509.975 kb on + strand, within Atu0519 at 509.982 kb on - strand, within Atu0519 at 510.083 kb on - strand, within Atu0519 at 510.083 kb on - strand, within Atu0519 at 510.126 kb on + strand, within Atu0519 at 510.215 kb on + strand, within Atu0519 at 510.217 kb on + strand, within Atu0519 at 510.283 kb on + strand, within Atu0519 at 510.291 kb on - strand, within Atu0519 at 510.291 kb on - strand, within Atu0519 at 510.296 kb on - strand, within Atu0519 at 510.330 kb on + strand, within Atu0519 at 510.387 kb on + strand, within Atu0519 at 510.441 kb on + strand, within Atu0519 at 510.469 kb on - strand, within Atu0519 at 510.513 kb on + strand, within Atu0519 at 510.513 kb on + strand, within Atu0519 at 510.521 kb on - strand, within Atu0519 at 510.550 kb on - strand, within Atu0519 at 510.572 kb on - strand at 510.579 kb on + strand at 510.588 kb on + strand at 510.596 kb on + strand at 510.693 kb on - strand at 510.731 kb on - strand, within Atu0520 at 510.767 kb on - strand, within Atu0520 at 510.767 kb on - strand, within Atu0520 at 510.865 kb on - strand, within Atu0520 at 510.930 kb on + strand, within Atu0520 at 510.936 kb on + strand, within Atu0520 at 510.938 kb on - strand, within Atu0520 at 511.091 kb on + strand at 511.091 kb on + strand at 511.099 kb on - strand at 511.099 kb on - strand at 511.164 kb on - strand, within Atu0521 at 511.166 kb on + strand, within Atu0521 at 511.198 kb on - strand, within Atu0521 at 511.203 kb on - strand, within Atu0521 at 511.205 kb on + strand, within Atu0521 at 511.241 kb on + strand, within Atu0521 at 511.241 kb on + strand, within Atu0521 at 511.282 kb on + strand, within Atu0521 at 511.365 kb on + strand, within Atu0521 at 511.443 kb on + strand, within Atu0521 at 511.445 kb on - strand, within Atu0521 at 511.473 kb on + strand, within Atu0521 at 511.507 kb on - strand, within Atu0521 at 511.516 kb on + strand, within Atu0521 at 511.564 kb on - strand at 511.564 kb on - strand at 511.637 kb on - strand at 511.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 508,686 + +1.3 508,693 + +0.6 508,813 - Atu0518 0.12 +0.9 508,845 - Atu0518 0.16 +1.4 508,928 - Atu0518 0.25 -0.3 509,027 - Atu0518 0.36 +0.3 509,034 + Atu0518 0.37 -0.7 509,076 + Atu0518 0.41 +0.8 509,211 + Atu0518 0.56 +0.3 509,224 - Atu0518 0.58 +0.2 509,268 - Atu0518 0.62 -0.1 509,350 + Atu0518 0.71 +2.5 509,357 - Atu0518 0.72 +0.3 509,421 + Atu0518 0.79 +0.6 509,450 + Atu0518 0.82 +0.9 509,498 + Atu0518 0.88 +0.9 509,498 + Atu0518 0.88 +1.6 509,498 + Atu0518 0.88 +0.4 509,498 + Atu0518 0.88 +0.7 509,498 + Atu0518 0.88 +0.8 509,506 - Atu0518 0.89 +1.6 509,506 - Atu0518 0.89 +0.4 509,506 - Atu0518 0.89 +0.9 509,544 + +0.8 509,603 + +0.4 509,611 - -0.0 509,662 + +0.7 509,674 + +0.0 509,682 - +0.8 509,722 + Atu0519 0.11 +1.2 509,826 - Atu0519 0.21 +1.4 509,937 + Atu0519 0.31 +0.1 509,974 + Atu0519 0.35 +1.3 509,975 + Atu0519 0.35 +0.7 509,982 - Atu0519 0.36 +0.7 510,083 - Atu0519 0.45 +0.0 510,083 - Atu0519 0.45 +0.5 510,126 + Atu0519 0.49 +0.5 510,215 + Atu0519 0.58 +2.2 510,217 + Atu0519 0.58 +0.6 510,283 + Atu0519 0.64 +0.8 510,291 - Atu0519 0.65 +0.5 510,291 - Atu0519 0.65 +0.7 510,296 - Atu0519 0.65 +0.6 510,330 + Atu0519 0.69 +0.5 510,387 + Atu0519 0.74 +0.6 510,441 + Atu0519 0.79 +0.5 510,469 - Atu0519 0.82 +1.0 510,513 + Atu0519 0.86 +0.6 510,513 + Atu0519 0.86 +0.9 510,521 - Atu0519 0.87 +1.2 510,550 - Atu0519 0.89 +0.3 510,572 - +0.5 510,579 + +1.2 510,588 + +1.1 510,596 + +1.1 510,693 - +0.0 510,731 - Atu0520 0.18 +1.1 510,767 - Atu0520 0.27 +0.8 510,767 - Atu0520 0.27 -1.3 510,865 - Atu0520 0.52 +1.4 510,930 + Atu0520 0.69 -0.4 510,936 + Atu0520 0.71 -0.1 510,938 - Atu0520 0.71 +0.2 511,091 + +1.0 511,091 + +0.1 511,099 - +0.5 511,099 - +0.7 511,164 - Atu0521 0.21 +0.8 511,166 + Atu0521 0.22 +0.2 511,198 - Atu0521 0.28 +0.1 511,203 - Atu0521 0.29 +0.4 511,205 + Atu0521 0.29 +0.8 511,241 + Atu0521 0.36 +0.1 511,241 + Atu0521 0.36 -0.0 511,282 + Atu0521 0.43 +0.2 511,365 + Atu0521 0.58 +0.4 511,443 + Atu0521 0.73 +0.2 511,445 - Atu0521 0.73 +0.4 511,473 + Atu0521 0.78 +0.2 511,507 - Atu0521 0.84 +0.8 511,516 + Atu0521 0.86 +1.2 511,564 - +0.2 511,564 - +0.4 511,637 - -1.3 511,637 - +0.2
Or see this region's nucleotide sequence