Strain Fitness in Agrobacterium fabrum C58 around Atu0518

Experiment: R2A with silver chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0517 and Atu0518 are separated by 13 nucleotidesAtu0518 and Atu0519 overlap by 4 nucleotides Atu0517: Atu0517 - Chemotaxis protein histidine kinase, at 506,474 to 508,687 Atu0517 Atu0518: Atu0518 - chemotaxis methyltransferase, at 508,701 to 509,609 Atu0518 Atu0519: Atu0519 - protein-glutamate methylesterase, at 509,606 to 510,661 Atu0519 Position (kb) 508 509 510Strain fitness (log2 ratio) -1 0 1 2at 507.728 kb on + strand, within Atu0517at 507.759 kb on - strand, within Atu0517at 507.778 kb on - strand, within Atu0517at 507.797 kb on + strand, within Atu0517at 507.826 kb on - strand, within Atu0517at 507.842 kb on + strand, within Atu0517at 507.850 kb on - strand, within Atu0517at 507.850 kb on - strand, within Atu0517at 507.907 kb on + strand, within Atu0517at 507.914 kb on - strand, within Atu0517at 507.925 kb on + strand, within Atu0517at 507.943 kb on - strand, within Atu0517at 508.042 kb on - strand, within Atu0517at 508.146 kb on + strand, within Atu0517at 508.235 kb on - strand, within Atu0517at 508.245 kb on + strand, within Atu0517at 508.245 kb on + strand, within Atu0517at 508.250 kb on - strand, within Atu0517at 508.297 kb on + strand, within Atu0517at 508.335 kb on - strand, within Atu0517at 508.341 kb on + strand, within Atu0517at 508.366 kb on + strand, within Atu0517at 508.429 kb on - strand, within Atu0517at 508.435 kb on + strand, within Atu0517at 508.442 kb on + strand, within Atu0517at 508.479 kb on + strandat 508.591 kb on + strandat 508.593 kb on + strandat 508.686 kb on + strandat 508.693 kb on + strandat 508.813 kb on - strand, within Atu0518at 508.845 kb on - strand, within Atu0518at 508.928 kb on - strand, within Atu0518at 509.027 kb on - strand, within Atu0518at 509.034 kb on + strand, within Atu0518at 509.076 kb on + strand, within Atu0518at 509.211 kb on + strand, within Atu0518at 509.224 kb on - strand, within Atu0518at 509.268 kb on - strand, within Atu0518at 509.350 kb on + strand, within Atu0518at 509.357 kb on - strand, within Atu0518at 509.421 kb on + strand, within Atu0518at 509.450 kb on + strand, within Atu0518at 509.498 kb on + strand, within Atu0518at 509.498 kb on + strand, within Atu0518at 509.498 kb on + strand, within Atu0518at 509.498 kb on + strand, within Atu0518at 509.498 kb on + strand, within Atu0518at 509.506 kb on - strand, within Atu0518at 509.506 kb on - strand, within Atu0518at 509.506 kb on - strand, within Atu0518at 509.544 kb on + strandat 509.603 kb on + strandat 509.611 kb on - strandat 509.662 kb on + strandat 509.674 kb on + strandat 509.682 kb on - strandat 509.722 kb on + strand, within Atu0519at 509.826 kb on - strand, within Atu0519at 509.937 kb on + strand, within Atu0519at 509.974 kb on + strand, within Atu0519at 509.975 kb on + strand, within Atu0519at 509.982 kb on - strand, within Atu0519at 510.083 kb on - strand, within Atu0519at 510.083 kb on - strand, within Atu0519at 510.126 kb on + strand, within Atu0519at 510.215 kb on + strand, within Atu0519at 510.217 kb on + strand, within Atu0519at 510.283 kb on + strand, within Atu0519at 510.291 kb on - strand, within Atu0519at 510.291 kb on - strand, within Atu0519at 510.296 kb on - strand, within Atu0519at 510.330 kb on + strand, within Atu0519at 510.387 kb on + strand, within Atu0519at 510.441 kb on + strand, within Atu0519at 510.469 kb on - strand, within Atu0519at 510.513 kb on + strand, within Atu0519at 510.513 kb on + strand, within Atu0519at 510.521 kb on - strand, within Atu0519at 510.550 kb on - strand, within Atu0519at 510.572 kb on - strandat 510.579 kb on + strandat 510.588 kb on + strandat 510.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM
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507,728 + Atu0517 0.57 +0.7
507,759 - Atu0517 0.58 +1.1
507,778 - Atu0517 0.59 -0.3
507,797 + Atu0517 0.60 +0.7
507,826 - Atu0517 0.61 +0.4
507,842 + Atu0517 0.62 +1.1
507,850 - Atu0517 0.62 +0.5
507,850 - Atu0517 0.62 -0.2
507,907 + Atu0517 0.65 +0.8
507,914 - Atu0517 0.65 +0.3
507,925 + Atu0517 0.66 +0.2
507,943 - Atu0517 0.66 +0.6
508,042 - Atu0517 0.71 +0.7
508,146 + Atu0517 0.76 +0.7
508,235 - Atu0517 0.80 +0.4
508,245 + Atu0517 0.80 +0.4
508,245 + Atu0517 0.80 -0.0
508,250 - Atu0517 0.80 +0.6
508,297 + Atu0517 0.82 +0.6
508,335 - Atu0517 0.84 +0.4
508,341 + Atu0517 0.84 +0.4
508,366 + Atu0517 0.85 +1.0
508,429 - Atu0517 0.88 +0.1
508,435 + Atu0517 0.89 +0.4
508,442 + Atu0517 0.89 -1.6
508,479 + +0.7
508,591 + +0.3
508,593 + +0.4
508,686 + +1.3
508,693 + +0.6
508,813 - Atu0518 0.12 +0.9
508,845 - Atu0518 0.16 +1.4
508,928 - Atu0518 0.25 -0.3
509,027 - Atu0518 0.36 +0.3
509,034 + Atu0518 0.37 -0.7
509,076 + Atu0518 0.41 +0.8
509,211 + Atu0518 0.56 +0.3
509,224 - Atu0518 0.58 +0.2
509,268 - Atu0518 0.62 -0.1
509,350 + Atu0518 0.71 +2.5
509,357 - Atu0518 0.72 +0.3
509,421 + Atu0518 0.79 +0.6
509,450 + Atu0518 0.82 +0.9
509,498 + Atu0518 0.88 +0.9
509,498 + Atu0518 0.88 +1.6
509,498 + Atu0518 0.88 +0.4
509,498 + Atu0518 0.88 +0.7
509,498 + Atu0518 0.88 +0.8
509,506 - Atu0518 0.89 +1.6
509,506 - Atu0518 0.89 +0.4
509,506 - Atu0518 0.89 +0.9
509,544 + +0.8
509,603 + +0.4
509,611 - -0.0
509,662 + +0.7
509,674 + +0.0
509,682 - +0.8
509,722 + Atu0519 0.11 +1.2
509,826 - Atu0519 0.21 +1.4
509,937 + Atu0519 0.31 +0.1
509,974 + Atu0519 0.35 +1.3
509,975 + Atu0519 0.35 +0.7
509,982 - Atu0519 0.36 +0.7
510,083 - Atu0519 0.45 +0.0
510,083 - Atu0519 0.45 +0.5
510,126 + Atu0519 0.49 +0.5
510,215 + Atu0519 0.58 +2.2
510,217 + Atu0519 0.58 +0.6
510,283 + Atu0519 0.64 +0.8
510,291 - Atu0519 0.65 +0.5
510,291 - Atu0519 0.65 +0.7
510,296 - Atu0519 0.65 +0.6
510,330 + Atu0519 0.69 +0.5
510,387 + Atu0519 0.74 +0.6
510,441 + Atu0519 0.79 +0.5
510,469 - Atu0519 0.82 +1.0
510,513 + Atu0519 0.86 +0.6
510,513 + Atu0519 0.86 +0.9
510,521 - Atu0519 0.87 +1.2
510,550 - Atu0519 0.89 +0.3
510,572 - +0.5
510,579 + +1.2
510,588 + +1.1
510,596 + +1.1

Or see this region's nucleotide sequence