Strain Fitness in Agrobacterium fabrum C58 around Atu3332

Experiment: R2A with sodium iodate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3330 and Atu3331 are separated by 138 nucleotidesAtu3331 and Atu3332 are separated by 19 nucleotidesAtu3332 and Atu3333 are separated by 239 nucleotides Atu3330: Atu3330 - methyl-accepting chemotaxis protein, at 364,570 to 366,387 Atu3330 Atu3331: Atu3331 - hypothetical protein, at 366,526 to 367,311 Atu3331 Atu3332: Atu3332 - hypothetical protein, at 367,331 to 368,317 Atu3332 Atu3333: Atu3333 - 3-ketoacyl-ACP reductase, at 368,557 to 369,342 Atu3333 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1at 366.497 kb on - strandat 366.542 kb on + strandat 366.627 kb on - strand, within Atu3331at 366.705 kb on + strand, within Atu3331at 366.768 kb on - strand, within Atu3331at 366.983 kb on + strand, within Atu3331at 366.992 kb on + strand, within Atu3331at 367.000 kb on - strand, within Atu3331at 367.086 kb on - strand, within Atu3331at 367.247 kb on - strandat 367.276 kb on - strandat 367.296 kb on + strandat 367.410 kb on + strandat 367.418 kb on - strandat 367.484 kb on + strand, within Atu3332at 367.529 kb on - strand, within Atu3332at 367.639 kb on - strand, within Atu3332at 367.701 kb on + strand, within Atu3332at 367.787 kb on - strand, within Atu3332at 367.787 kb on - strand, within Atu3332at 367.792 kb on - strand, within Atu3332at 367.793 kb on - strand, within Atu3332at 367.793 kb on - strand, within Atu3332at 367.877 kb on + strand, within Atu3332at 367.920 kb on + strand, within Atu3332at 367.958 kb on - strand, within Atu3332at 367.994 kb on + strand, within Atu3332at 368.094 kb on + strand, within Atu3332at 368.094 kb on + strand, within Atu3332at 368.102 kb on - strand, within Atu3332at 368.137 kb on + strand, within Atu3332at 368.145 kb on - strand, within Atu3332at 368.173 kb on + strand, within Atu3332at 368.190 kb on + strand, within Atu3332at 368.215 kb on - strand, within Atu3332at 368.289 kb on - strandat 368.435 kb on - strandat 368.488 kb on - strandat 368.491 kb on + strandat 368.517 kb on + strandat 368.530 kb on + strandat 368.817 kb on + strand, within Atu3333at 368.858 kb on - strand, within Atu3333at 368.880 kb on + strand, within Atu3333at 368.889 kb on + strand, within Atu3333at 368.897 kb on - strand, within Atu3333at 368.897 kb on - strand, within Atu3333at 368.897 kb on - strand, within Atu3333at 368.922 kb on + strand, within Atu3333at 368.961 kb on + strand, within Atu3333at 368.976 kb on - strand, within Atu3333at 369.021 kb on + strand, within Atu3333at 369.078 kb on + strand, within Atu3333at 369.138 kb on - strand, within Atu3333at 369.267 kb on + strandat 369.267 kb on + strandat 369.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium iodate 30 mM
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366,497 - +0.0
366,542 + -0.2
366,627 - Atu3331 0.13 +1.1
366,705 + Atu3331 0.23 -0.1
366,768 - Atu3331 0.31 -0.3
366,983 + Atu3331 0.58 -0.6
366,992 + Atu3331 0.59 -0.8
367,000 - Atu3331 0.60 +0.4
367,086 - Atu3331 0.71 +0.2
367,247 - -0.4
367,276 - -0.1
367,296 + -0.2
367,410 + -0.0
367,418 - -0.1
367,484 + Atu3332 0.16 -0.4
367,529 - Atu3332 0.20 +1.0
367,639 - Atu3332 0.31 -1.0
367,701 + Atu3332 0.37 -2.1
367,787 - Atu3332 0.46 +0.8
367,787 - Atu3332 0.46 -1.0
367,792 - Atu3332 0.47 +0.1
367,793 - Atu3332 0.47 -0.6
367,793 - Atu3332 0.47 -1.0
367,877 + Atu3332 0.55 -0.4
367,920 + Atu3332 0.60 -0.2
367,958 - Atu3332 0.64 -0.4
367,994 + Atu3332 0.67 -0.4
368,094 + Atu3332 0.77 -0.7
368,094 + Atu3332 0.77 -0.0
368,102 - Atu3332 0.78 -2.0
368,137 + Atu3332 0.82 +0.6
368,145 - Atu3332 0.82 +0.1
368,173 + Atu3332 0.85 +1.1
368,190 + Atu3332 0.87 -0.8
368,215 - Atu3332 0.90 -0.7
368,289 - -0.6
368,435 - +0.6
368,488 - -1.1
368,491 + -2.2
368,517 + -0.4
368,530 + -0.1
368,817 + Atu3333 0.33 -0.4
368,858 - Atu3333 0.38 +0.3
368,880 + Atu3333 0.41 -0.3
368,889 + Atu3333 0.42 -0.4
368,897 - Atu3333 0.43 -0.3
368,897 - Atu3333 0.43 -0.2
368,897 - Atu3333 0.43 -0.1
368,922 + Atu3333 0.46 -0.1
368,961 + Atu3333 0.51 +0.0
368,976 - Atu3333 0.53 -0.2
369,021 + Atu3333 0.59 +0.0
369,078 + Atu3333 0.66 +0.6
369,138 - Atu3333 0.74 -0.8
369,267 + -0.3
369,267 + -0.3
369,307 + -2.0

Or see this region's nucleotide sequence