Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3502 and Atu3503 are separated by 3 nucleotides Atu3503 and Atu3504 are separated by 61 nucleotides Atu3504 and Atu3505 are separated by 169 nucleotides
Atu3502: Atu3502 - ABC transporter permease, at 552,840 to 553,727
Atu3502
Atu3503: Atu3503 - ABC transporter permease, at 553,731 to 554,564
Atu3503
Atu3504: Atu3504 - sulfate ABC transporter substrate-binding protein, at 554,626 to 555,612
Atu3504
Atu3505: Atu3505 - 3-hydroxyisobutyryl-CoA hydrolase, at 555,782 to 556,834
Atu3505
Position (kb) 554
555
556 Strain fitness (log2 ratio) -1
0
1 at 553.707 kb on - strand at 553.742 kb on + strand at 553.744 kb on + strand at 553.752 kb on - strand at 553.752 kb on - strand at 553.866 kb on - strand, within Atu3503 at 553.976 kb on + strand, within Atu3503 at 554.140 kb on - strand, within Atu3503 at 554.154 kb on - strand, within Atu3503 at 554.157 kb on - strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.320 kb on - strand, within Atu3503 at 554.341 kb on + strand, within Atu3503 at 554.443 kb on - strand, within Atu3503 at 554.457 kb on - strand, within Atu3503 at 554.504 kb on + strand at 554.504 kb on + strand at 554.512 kb on - strand at 554.512 kb on - strand at 554.532 kb on + strand at 554.740 kb on - strand, within Atu3504 at 554.819 kb on + strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.913 kb on + strand, within Atu3504 at 554.931 kb on - strand, within Atu3504 at 554.933 kb on - strand, within Atu3504 at 554.990 kb on + strand, within Atu3504 at 555.028 kb on + strand, within Atu3504 at 555.034 kb on - strand, within Atu3504 at 555.060 kb on - strand, within Atu3504 at 555.131 kb on + strand, within Atu3504 at 555.163 kb on - strand, within Atu3504 at 555.176 kb on - strand, within Atu3504 at 555.239 kb on + strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.278 kb on + strand, within Atu3504 at 555.332 kb on + strand, within Atu3504 at 555.369 kb on + strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.442 kb on - strand, within Atu3504 at 555.466 kb on - strand, within Atu3504 at 555.492 kb on - strand, within Atu3504 at 555.547 kb on - strand at 555.571 kb on - strand at 555.638 kb on + strand at 555.788 kb on - strand at 555.788 kb on - strand at 555.795 kb on - strand at 555.840 kb on - strand at 555.899 kb on + strand, within Atu3505 at 555.904 kb on + strand, within Atu3505 at 556.070 kb on + strand, within Atu3505 at 556.217 kb on + strand, within Atu3505 at 556.239 kb on + strand, within Atu3505 at 556.253 kb on + strand, within Atu3505 at 556.259 kb on - strand, within Atu3505 at 556.522 kb on + strand, within Atu3505 at 556.526 kb on + strand, within Atu3505
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 553,707 - +1.0 553,742 + -0.0 553,744 + -0.2 553,752 - +0.5 553,752 - -0.4 553,866 - Atu3503 0.16 +0.6 553,976 + Atu3503 0.29 -0.1 554,140 - Atu3503 0.49 +0.2 554,154 - Atu3503 0.51 -0.2 554,157 - Atu3503 0.51 +0.2 554,159 + Atu3503 0.51 +0.1 554,159 + Atu3503 0.51 +0.4 554,320 - Atu3503 0.71 +0.0 554,341 + Atu3503 0.73 +0.1 554,443 - Atu3503 0.85 -0.1 554,457 - Atu3503 0.87 -0.4 554,504 + -0.3 554,504 + +0.0 554,512 - -0.2 554,512 - +0.1 554,532 + +1.6 554,740 - Atu3504 0.12 +0.1 554,819 + Atu3504 0.20 +0.4 554,827 - Atu3504 0.20 +0.1 554,827 - Atu3504 0.20 -0.4 554,913 + Atu3504 0.29 -0.1 554,931 - Atu3504 0.31 +0.3 554,933 - Atu3504 0.31 -0.1 554,990 + Atu3504 0.37 +0.3 555,028 + Atu3504 0.41 -0.0 555,034 - Atu3504 0.41 -0.1 555,060 - Atu3504 0.44 +0.1 555,131 + Atu3504 0.51 +0.1 555,163 - Atu3504 0.54 -0.2 555,176 - Atu3504 0.56 +0.6 555,239 + Atu3504 0.62 +1.1 555,247 - Atu3504 0.63 -0.8 555,247 - Atu3504 0.63 +0.0 555,278 + Atu3504 0.66 +1.1 555,332 + Atu3504 0.72 -0.3 555,369 + Atu3504 0.75 -0.3 555,377 - Atu3504 0.76 +0.5 555,377 - Atu3504 0.76 +0.5 555,377 - Atu3504 0.76 -0.3 555,377 - Atu3504 0.76 -0.5 555,377 - Atu3504 0.76 -0.3 555,442 - Atu3504 0.83 -0.0 555,466 - Atu3504 0.85 +0.0 555,492 - Atu3504 0.88 -0.3 555,547 - +0.0 555,571 - +0.4 555,638 + -1.1 555,788 - +1.5 555,788 - -0.3 555,795 - -0.2 555,840 - -0.4 555,899 + Atu3505 0.11 -0.7 555,904 + Atu3505 0.12 -1.1 556,070 + Atu3505 0.27 -0.7 556,217 + Atu3505 0.41 -0.4 556,239 + Atu3505 0.43 -0.5 556,253 + Atu3505 0.45 -0.8 556,259 - Atu3505 0.45 -1.2 556,522 + Atu3505 0.70 +0.0 556,526 + Atu3505 0.71 -0.6
Or see this region's nucleotide sequence