Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3501 and Atu3502 are separated by 5 nucleotides Atu3502 and Atu3503 are separated by 3 nucleotides Atu3503 and Atu3504 are separated by 61 nucleotides
Atu3501: Atu3501 - ABC transporter permease, at 551,809 to 552,834
Atu3501
Atu3502: Atu3502 - ABC transporter permease, at 552,840 to 553,727
Atu3502
Atu3503: Atu3503 - ABC transporter permease, at 553,731 to 554,564
Atu3503
Atu3504: Atu3504 - sulfate ABC transporter substrate-binding protein, at 554,626 to 555,612
Atu3504
Position (kb) 552
553
554 Strain fitness (log2 ratio) -1
0
1 at 551.950 kb on + strand, within Atu3501 at 552.088 kb on - strand, within Atu3501 at 552.126 kb on + strand, within Atu3501 at 552.152 kb on + strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.380 kb on - strand, within Atu3501 at 552.405 kb on - strand, within Atu3501 at 552.448 kb on - strand, within Atu3501 at 552.483 kb on - strand, within Atu3501 at 552.954 kb on + strand, within Atu3502 at 553.016 kb on - strand, within Atu3502 at 553.024 kb on + strand, within Atu3502 at 553.090 kb on + strand, within Atu3502 at 553.103 kb on - strand, within Atu3502 at 553.108 kb on + strand, within Atu3502 at 553.108 kb on - strand, within Atu3502 at 553.190 kb on - strand, within Atu3502 at 553.211 kb on + strand, within Atu3502 at 553.367 kb on - strand, within Atu3502 at 553.410 kb on - strand, within Atu3502 at 553.481 kb on - strand, within Atu3502 at 553.506 kb on - strand, within Atu3502 at 553.563 kb on + strand, within Atu3502 at 553.571 kb on + strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.623 kb on + strand, within Atu3502 at 553.707 kb on - strand at 553.742 kb on + strand at 553.744 kb on + strand at 553.752 kb on - strand at 553.752 kb on - strand at 553.866 kb on - strand, within Atu3503 at 553.976 kb on + strand, within Atu3503 at 554.140 kb on - strand, within Atu3503 at 554.154 kb on - strand, within Atu3503 at 554.157 kb on - strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.320 kb on - strand, within Atu3503 at 554.341 kb on + strand, within Atu3503 at 554.443 kb on - strand, within Atu3503 at 554.457 kb on - strand, within Atu3503 at 554.504 kb on + strand at 554.504 kb on + strand at 554.512 kb on - strand at 554.512 kb on - strand at 554.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 551,950 + Atu3501 0.14 -0.2 552,088 - Atu3501 0.27 -0.1 552,126 + Atu3501 0.31 +0.4 552,152 + Atu3501 0.33 -0.4 552,205 - Atu3501 0.39 +0.0 552,205 - Atu3501 0.39 +0.5 552,215 - Atu3501 0.40 +1.0 552,215 - Atu3501 0.40 +0.0 552,380 - Atu3501 0.56 -0.1 552,405 - Atu3501 0.58 +0.1 552,448 - Atu3501 0.62 +0.0 552,483 - Atu3501 0.66 +0.0 552,954 + Atu3502 0.13 +0.3 553,016 - Atu3502 0.20 +0.2 553,024 + Atu3502 0.21 +0.6 553,090 + Atu3502 0.28 -0.2 553,103 - Atu3502 0.30 +0.2 553,108 + Atu3502 0.30 +0.6 553,108 - Atu3502 0.30 -1.3 553,190 - Atu3502 0.39 +0.1 553,211 + Atu3502 0.42 -1.4 553,367 - Atu3502 0.59 +0.5 553,410 - Atu3502 0.64 +0.1 553,481 - Atu3502 0.72 -0.2 553,506 - Atu3502 0.75 -0.2 553,563 + Atu3502 0.81 +1.0 553,571 + Atu3502 0.82 -0.6 553,579 - Atu3502 0.83 +0.0 553,579 - Atu3502 0.83 -0.1 553,623 + Atu3502 0.88 -0.1 553,707 - +1.0 553,742 + -0.0 553,744 + -0.2 553,752 - +0.5 553,752 - -0.4 553,866 - Atu3503 0.16 +0.6 553,976 + Atu3503 0.29 -0.1 554,140 - Atu3503 0.49 +0.2 554,154 - Atu3503 0.51 -0.2 554,157 - Atu3503 0.51 +0.2 554,159 + Atu3503 0.51 +0.1 554,159 + Atu3503 0.51 +0.4 554,320 - Atu3503 0.71 +0.0 554,341 + Atu3503 0.73 +0.1 554,443 - Atu3503 0.85 -0.1 554,457 - Atu3503 0.87 -0.4 554,504 + -0.3 554,504 + +0.0 554,512 - -0.2 554,512 - +0.1 554,532 + +1.6
Or see this region's nucleotide sequence