Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2639 and Atu2640 are separated by 178 nucleotides Atu2640 and Atu2641 are separated by 92 nucleotides Atu2641 and Atu2642 are separated by 205 nucleotides
Atu2639: Atu2639 - putative malate dehydrogenase, at 2,624,795 to 2,625,757
Atu2639
Atu2640: Atu2640 - hypothetical protein, at 2,625,936 to 2,627,099
Atu2640
Atu2641: Atu2641 - hypothetical protein, at 2,627,192 to 2,627,734
Atu2641
Atu2642: Atu2642 - succinate dehydrogenase iron-sulfur, at 2,627,940 to 2,628,719
Atu2642
Position (kb)
2625
2626
2627
2628 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2626.006 kb on - strand at 2626.179 kb on + strand, within Atu2640 at 2626.233 kb on - strand, within Atu2640 at 2626.255 kb on - strand, within Atu2640 at 2626.356 kb on - strand, within Atu2640 at 2626.400 kb on + strand, within Atu2640 at 2626.404 kb on + strand, within Atu2640 at 2626.422 kb on + strand, within Atu2640 at 2626.453 kb on - strand, within Atu2640 at 2626.455 kb on + strand, within Atu2640 at 2626.463 kb on - strand, within Atu2640 at 2626.802 kb on + strand, within Atu2640 at 2626.810 kb on - strand, within Atu2640 at 2626.869 kb on + strand, within Atu2640 at 2627.160 kb on - strand at 2627.794 kb on - strand at 2627.811 kb on - strand at 2627.811 kb on - strand at 2627.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 2,626,006 - -0.2 2,626,179 + Atu2640 0.21 -0.7 2,626,233 - Atu2640 0.26 +0.2 2,626,255 - Atu2640 0.27 -0.6 2,626,356 - Atu2640 0.36 +0.6 2,626,400 + Atu2640 0.40 -0.2 2,626,404 + Atu2640 0.40 -0.7 2,626,422 + Atu2640 0.42 -1.9 2,626,453 - Atu2640 0.44 +0.0 2,626,455 + Atu2640 0.45 -2.1 2,626,463 - Atu2640 0.45 -0.6 2,626,802 + Atu2640 0.74 -0.5 2,626,810 - Atu2640 0.75 -0.5 2,626,869 + Atu2640 0.80 -1.5 2,627,160 - -0.0 2,627,794 - +1.9 2,627,811 - +0.8 2,627,811 - -0.1 2,627,893 + +0.2
Or see this region's nucleotide sequence