Strain Fitness in Agrobacterium fabrum C58 around Atu1821

Experiment: R2A with bromate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1819 and Atu1820 are separated by 111 nucleotidesAtu1820 and Atu1821 are separated by 37 nucleotidesAtu1821 and Atu1822 are separated by 16 nucleotides Atu1819: Atu1819 - hypothetical protein, at 1,798,822 to 1,799,211 Atu1819 Atu1820: Atu1820 - hypothetical protein, at 1,799,323 to 1,799,706 Atu1820 Atu1821: Atu1821 - cysteine desulfurase, at 1,799,744 to 1,800,970 Atu1821 Atu1822: Atu1822 - transport system, at 1,800,987 to 1,802,258 Atu1822 Position (kb) 1799 1800 1801Strain fitness (log2 ratio) -1 0 1at 1798.748 kb on - strandat 1799.715 kb on - strandat 1799.716 kb on - strandat 1799.725 kb on + strandat 1799.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with bromate 5 mM
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1,798,748 - +0.2
1,799,715 - -0.5
1,799,716 - +0.1
1,799,725 + +0.4
1,799,728 - +1.0

Or see this region's nucleotide sequence