Strain Fitness in Agrobacterium fabrum C58 around Atu1435

Experiment: R2A with bromate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1434 and Atu1435 are separated by 97 nucleotidesAtu1435 and Atu1436 are separated by 103 nucleotides Atu1434: Atu1434 - dihydrolipoamide dehydrogenase, at 1,428,507 to 1,429,952 Atu1434 Atu1435: Atu1435 - hypothetical protein, at 1,430,050 to 1,430,298 Atu1435 Atu1436: Atu1436 - lipoic Acid Synthetase, at 1,430,402 to 1,431,373 Atu1436 Position (kb) 1430 1431Strain fitness (log2 ratio) -1 0 1at 1429.982 kb on - strandat 1430.065 kb on - strandat 1430.168 kb on + strand, within Atu1435at 1430.200 kb on + strand, within Atu1435at 1430.263 kb on - strand, within Atu1435

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with bromate 5 mM
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1,429,982 - -0.1
1,430,065 - +0.2
1,430,168 + Atu1435 0.47 -0.2
1,430,200 + Atu1435 0.60 -0.9
1,430,263 - Atu1435 0.86 -0.6

Or see this region's nucleotide sequence