Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0820 and Atu0821 are separated by 196 nucleotides Atu0821 and Atu0822 overlap by 8 nucleotides Atu0822 and Atu0823 are separated by 11 nucleotides
Atu0820: Atu0820 - ABC transporter, substrate binding protein (sulfate), at 818,166 to 819,191
Atu0820
Atu0821: Atu0821 - ABC transporter, membrane spanning protein, at 819,388 to 820,245
Atu0821
Atu0822: Atu0822 - ABC transporter, membrane spanning protein, at 820,238 to 821,110
Atu0822
Atu0823: Atu0823 - ABC transporter, nucleotide binding/ATPase protein, at 821,122 to 822,162
Atu0823
Position (kb) 819
820
821 Strain fitness (log2 ratio) -1
0
1 at 818.407 kb on + strand, within Atu0820 at 818.486 kb on + strand, within Atu0820 at 818.560 kb on + strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.625 kb on - strand, within Atu0820 at 818.658 kb on - strand, within Atu0820 at 818.664 kb on + strand, within Atu0820 at 818.668 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.708 kb on + strand, within Atu0820 at 818.714 kb on + strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.740 kb on - strand, within Atu0820 at 818.782 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.800 kb on - strand, within Atu0820 at 818.930 kb on - strand, within Atu0820 at 818.979 kb on - strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 818.997 kb on + strand, within Atu0820 at 819.020 kb on + strand, within Atu0820 at 819.022 kb on + strand, within Atu0820 at 819.037 kb on + strand, within Atu0820 at 819.122 kb on + strand at 819.130 kb on - strand at 819.459 kb on - strand at 819.502 kb on - strand, within Atu0821 at 819.534 kb on + strand, within Atu0821 at 819.578 kb on + strand, within Atu0821 at 819.737 kb on - strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.746 kb on + strand, within Atu0821 at 819.754 kb on - strand, within Atu0821 at 819.763 kb on + strand, within Atu0821 at 819.770 kb on - strand, within Atu0821 at 819.821 kb on + strand, within Atu0821 at 819.829 kb on - strand, within Atu0821 at 819.918 kb on + strand, within Atu0821 at 819.968 kb on + strand, within Atu0821 at 819.984 kb on - strand, within Atu0821 at 819.994 kb on + strand, within Atu0821 at 820.054 kb on + strand, within Atu0821 at 820.062 kb on - strand, within Atu0821 at 820.101 kb on + strand, within Atu0821 at 820.221 kb on - strand at 820.297 kb on - strand at 820.436 kb on - strand, within Atu0822 at 820.550 kb on + strand, within Atu0822 at 820.553 kb on + strand, within Atu0822 at 820.627 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.650 kb on - strand, within Atu0822 at 820.654 kb on + strand, within Atu0822 at 820.750 kb on - strand, within Atu0822 at 820.766 kb on - strand, within Atu0822 at 820.830 kb on + strand, within Atu0822 at 820.835 kb on - strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.861 kb on + strand, within Atu0822 at 820.871 kb on + strand, within Atu0822 at 820.879 kb on - strand, within Atu0822 at 820.928 kb on + strand, within Atu0822 at 821.011 kb on - strand, within Atu0822 at 821.175 kb on + strand at 821.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 818,407 + Atu0820 0.23 -0.5 818,486 + Atu0820 0.31 -0.7 818,560 + Atu0820 0.38 +0.0 818,569 - Atu0820 0.39 -0.7 818,569 - Atu0820 0.39 -1.0 818,569 - Atu0820 0.39 +0.4 818,625 - Atu0820 0.45 +0.0 818,658 - Atu0820 0.48 -0.3 818,664 + Atu0820 0.49 +0.0 818,668 + Atu0820 0.49 +0.1 818,687 + Atu0820 0.51 -0.3 818,687 + Atu0820 0.51 -0.2 818,687 + Atu0820 0.51 -1.3 818,695 - Atu0820 0.52 -0.9 818,695 - Atu0820 0.52 +0.1 818,695 - Atu0820 0.52 +0.2 818,695 - Atu0820 0.52 -0.4 818,708 + Atu0820 0.53 -0.7 818,714 + Atu0820 0.53 -0.2 818,716 - Atu0820 0.54 +0.1 818,716 - Atu0820 0.54 -1.0 818,740 - Atu0820 0.56 -0.3 818,782 + Atu0820 0.60 +0.3 818,792 + Atu0820 0.61 -0.5 818,792 + Atu0820 0.61 -0.3 818,800 - Atu0820 0.62 -0.3 818,930 - Atu0820 0.74 -0.3 818,979 - Atu0820 0.79 -0.2 818,997 + Atu0820 0.81 +0.1 818,997 + Atu0820 0.81 -1.0 819,020 + Atu0820 0.83 -0.0 819,022 + Atu0820 0.83 -0.3 819,037 + Atu0820 0.85 -1.0 819,122 + +0.0 819,130 - -0.4 819,459 - +0.7 819,502 - Atu0821 0.13 +0.0 819,534 + Atu0821 0.17 -1.2 819,578 + Atu0821 0.22 -0.0 819,737 - Atu0821 0.41 -0.5 819,746 + Atu0821 0.42 +0.4 819,746 + Atu0821 0.42 +0.8 819,746 + Atu0821 0.42 -0.5 819,746 + Atu0821 0.42 -0.0 819,754 - Atu0821 0.43 -0.4 819,763 + Atu0821 0.44 -0.3 819,770 - Atu0821 0.45 +0.9 819,821 + Atu0821 0.50 -0.1 819,829 - Atu0821 0.51 -0.4 819,918 + Atu0821 0.62 -0.6 819,968 + Atu0821 0.68 +0.9 819,984 - Atu0821 0.69 -1.6 819,994 + Atu0821 0.71 +0.2 820,054 + Atu0821 0.78 -0.2 820,062 - Atu0821 0.79 -0.7 820,101 + Atu0821 0.83 -0.5 820,221 - -1.0 820,297 - -1.2 820,436 - Atu0822 0.23 -0.3 820,550 + Atu0822 0.36 +0.0 820,553 + Atu0822 0.36 +0.2 820,627 - Atu0822 0.45 +0.1 820,650 - Atu0822 0.47 -1.1 820,650 - Atu0822 0.47 +0.6 820,654 + Atu0822 0.48 -0.7 820,750 - Atu0822 0.59 +0.2 820,766 - Atu0822 0.60 +0.1 820,830 + Atu0822 0.68 -0.4 820,835 - Atu0822 0.68 -0.7 820,861 + Atu0822 0.71 -0.1 820,861 + Atu0822 0.71 +0.3 820,871 + Atu0822 0.73 -0.1 820,879 - Atu0822 0.73 -0.4 820,928 + Atu0822 0.79 -0.7 821,011 - Atu0822 0.89 -0.1 821,175 + -0.0 821,220 + -0.2
Or see this region's nucleotide sequence