Strain Fitness in Agrobacterium fabrum C58 around Atu5124

Experiment: R2A with Chlorate 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5123 and Atu5124 overlap by 1 nucleotidesAtu5124 and Atu5125 are separated by 114 nucleotides Atu5123: Atu5123 - acetolactate synthase catalytic subunit, at 129,201 to 130,916 Atu5123 Atu5124: Atu5124 - glutamate-1-semialdehyde aminotransferase, at 130,916 to 132,250 Atu5124 Atu5125: Atu5125 - GntR family transcriptional regulator, at 132,365 to 133,054 Atu5125 Position (kb) 130 131 132 133Strain fitness (log2 ratio) -1 0 1at 129.993 kb on - strand, within Atu5123at 130.020 kb on - strand, within Atu5123at 130.020 kb on - strand, within Atu5123at 130.044 kb on - strand, within Atu5123at 130.126 kb on - strand, within Atu5123at 130.174 kb on + strand, within Atu5123at 130.182 kb on - strand, within Atu5123at 130.215 kb on - strand, within Atu5123at 130.247 kb on - strand, within Atu5123at 130.249 kb on - strand, within Atu5123at 130.351 kb on - strand, within Atu5123at 130.405 kb on - strand, within Atu5123at 130.545 kb on - strand, within Atu5123at 130.598 kb on - strand, within Atu5123at 130.634 kb on + strand, within Atu5123at 130.647 kb on - strand, within Atu5123at 130.656 kb on - strand, within Atu5123at 130.687 kb on - strand, within Atu5123at 130.689 kb on + strand, within Atu5123at 130.697 kb on - strand, within Atu5123at 130.697 kb on - strand, within Atu5123at 130.735 kb on + strand, within Atu5123at 130.789 kb on - strandat 130.789 kb on - strandat 130.789 kb on - strandat 130.986 kb on + strandat 131.072 kb on - strand, within Atu5124at 131.210 kb on + strand, within Atu5124at 131.210 kb on + strand, within Atu5124at 131.218 kb on - strand, within Atu5124at 131.218 kb on - strand, within Atu5124at 131.275 kb on - strand, within Atu5124at 131.325 kb on + strand, within Atu5124at 131.325 kb on + strand, within Atu5124at 131.383 kb on + strand, within Atu5124at 131.389 kb on - strand, within Atu5124at 131.429 kb on - strand, within Atu5124at 131.449 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.549 kb on + strand, within Atu5124at 131.567 kb on + strand, within Atu5124at 131.569 kb on + strand, within Atu5124at 131.577 kb on - strand, within Atu5124at 131.579 kb on - strand, within Atu5124at 131.590 kb on + strand, within Atu5124at 131.590 kb on - strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.881 kb on + strand, within Atu5124at 131.894 kb on + strand, within Atu5124at 131.974 kb on - strand, within Atu5124at 131.984 kb on - strand, within Atu5124at 131.984 kb on - strand, within Atu5124at 132.011 kb on - strand, within Atu5124at 132.121 kb on + strandat 132.144 kb on - strandat 132.148 kb on + strandat 132.525 kb on + strand, within Atu5125at 132.533 kb on - strand, within Atu5125at 132.533 kb on - strand, within Atu5125at 132.541 kb on + strand, within Atu5125at 132.549 kb on - strand, within Atu5125at 132.565 kb on + strand, within Atu5125at 132.786 kb on - strand, within Atu5125at 132.834 kb on - strand, within Atu5125at 132.877 kb on - strand, within Atu5125at 132.892 kb on - strand, within Atu5125at 132.899 kb on + strand, within Atu5125at 132.920 kb on + strand, within Atu5125at 132.966 kb on + strand, within Atu5125at 133.009 kb on + strandat 133.036 kb on - strandat 133.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorate 400 mM
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129,993 - Atu5123 0.46 -0.2
130,020 - Atu5123 0.48 +0.2
130,020 - Atu5123 0.48 -1.0
130,044 - Atu5123 0.49 -0.0
130,126 - Atu5123 0.54 -0.2
130,174 + Atu5123 0.57 +0.1
130,182 - Atu5123 0.57 -0.5
130,215 - Atu5123 0.59 +0.6
130,247 - Atu5123 0.61 +0.0
130,249 - Atu5123 0.61 -0.2
130,351 - Atu5123 0.67 +0.1
130,405 - Atu5123 0.70 +0.8
130,545 - Atu5123 0.78 -0.3
130,598 - Atu5123 0.81 +0.5
130,634 + Atu5123 0.84 -0.0
130,647 - Atu5123 0.84 -0.1
130,656 - Atu5123 0.85 -0.6
130,687 - Atu5123 0.87 +0.2
130,689 + Atu5123 0.87 -0.3
130,697 - Atu5123 0.87 +0.5
130,697 - Atu5123 0.87 +1.2
130,735 + Atu5123 0.89 -0.2
130,789 - -0.1
130,789 - -0.4
130,789 - -0.0
130,986 + +0.4
131,072 - Atu5124 0.12 +0.2
131,210 + Atu5124 0.22 -0.5
131,210 + Atu5124 0.22 +0.4
131,218 - Atu5124 0.23 -0.3
131,218 - Atu5124 0.23 +0.5
131,275 - Atu5124 0.27 -0.3
131,325 + Atu5124 0.31 -0.6
131,325 + Atu5124 0.31 +0.0
131,383 + Atu5124 0.35 +0.3
131,389 - Atu5124 0.35 +1.0
131,429 - Atu5124 0.38 -0.1
131,449 - Atu5124 0.40 +0.1
131,506 - Atu5124 0.44 -0.3
131,506 - Atu5124 0.44 +0.3
131,506 - Atu5124 0.44 -0.1
131,549 + Atu5124 0.47 -0.1
131,567 + Atu5124 0.49 +0.3
131,569 + Atu5124 0.49 +0.3
131,577 - Atu5124 0.50 -0.4
131,579 - Atu5124 0.50 +0.3
131,590 + Atu5124 0.50 -0.4
131,590 - Atu5124 0.50 -0.1
131,777 + Atu5124 0.64 -0.7
131,777 + Atu5124 0.64 -0.1
131,777 + Atu5124 0.64 +0.4
131,777 + Atu5124 0.64 -1.0
131,785 - Atu5124 0.65 -0.0
131,785 - Atu5124 0.65 +0.3
131,785 - Atu5124 0.65 -0.4
131,785 - Atu5124 0.65 +0.2
131,785 - Atu5124 0.65 +1.0
131,799 + Atu5124 0.66 +0.9
131,799 + Atu5124 0.66 -0.4
131,799 + Atu5124 0.66 +0.3
131,799 + Atu5124 0.66 +0.5
131,807 - Atu5124 0.67 +0.5
131,807 - Atu5124 0.67 -0.1
131,807 - Atu5124 0.67 +0.3
131,807 - Atu5124 0.67 -0.1
131,881 + Atu5124 0.72 -0.6
131,894 + Atu5124 0.73 +0.2
131,974 - Atu5124 0.79 -0.2
131,984 - Atu5124 0.80 -0.1
131,984 - Atu5124 0.80 -0.5
132,011 - Atu5124 0.82 -0.1
132,121 + +1.0
132,144 - +0.1
132,148 + -0.2
132,525 + Atu5125 0.23 -0.1
132,533 - Atu5125 0.24 -0.5
132,533 - Atu5125 0.24 -0.7
132,541 + Atu5125 0.26 +0.3
132,549 - Atu5125 0.27 -1.7
132,565 + Atu5125 0.29 -0.4
132,786 - Atu5125 0.61 -1.2
132,834 - Atu5125 0.68 -0.3
132,877 - Atu5125 0.74 -0.0
132,892 - Atu5125 0.76 +0.7
132,899 + Atu5125 0.77 -0.5
132,920 + Atu5125 0.80 -0.5
132,966 + Atu5125 0.87 +0.3
133,009 + -1.4
133,036 - -1.2
133,218 - -0.1

Or see this region's nucleotide sequence