Experiment: R2A with Chlorate 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3898 and Atu3899 are separated by 141 nucleotides Atu3899 and Atu3900 are separated by 10 nucleotides
Atu3898: Atu3898 - DeoR family transcriptional regulator, at 993,899 to 994,672
Atu3898
Atu3899: Atu3899 - siroheme synthase, at 994,814 to 996,241
Atu3899
Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900
Atu3900
Position (kb) 994
995
996
997 Strain fitness (log2 ratio) -2
-1
0
1 at 993.943 kb on + strand at 994.000 kb on - strand, within Atu3898 at 994.000 kb on - strand, within Atu3898 at 994.101 kb on + strand, within Atu3898 at 994.124 kb on + strand, within Atu3898 at 994.134 kb on + strand, within Atu3898 at 994.134 kb on + strand, within Atu3898 at 994.134 kb on + strand, within Atu3898 at 994.228 kb on + strand, within Atu3898 at 994.290 kb on - strand, within Atu3898 at 994.290 kb on - strand, within Atu3898 at 994.348 kb on - strand, within Atu3898 at 994.531 kb on + strand, within Atu3898 at 994.550 kb on + strand, within Atu3898 at 994.570 kb on + strand, within Atu3898 at 994.612 kb on + strand at 994.732 kb on + strand at 994.739 kb on - strand at 994.754 kb on + strand at 994.844 kb on + strand at 994.849 kb on + strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.964 kb on + strand, within Atu3899 at 995.027 kb on - strand, within Atu3899 at 995.043 kb on + strand, within Atu3899 at 995.043 kb on + strand, within Atu3899 at 995.081 kb on - strand, within Atu3899 at 995.107 kb on - strand, within Atu3899 at 995.165 kb on - strand, within Atu3899 at 995.191 kb on + strand, within Atu3899 at 995.205 kb on - strand, within Atu3899 at 995.237 kb on + strand, within Atu3899 at 995.341 kb on + strand, within Atu3899 at 995.349 kb on - strand, within Atu3899 at 995.407 kb on - strand, within Atu3899 at 995.472 kb on - strand, within Atu3899 at 995.489 kb on + strand, within Atu3899 at 995.509 kb on + strand, within Atu3899 at 995.548 kb on + strand, within Atu3899 at 995.557 kb on - strand, within Atu3899 at 995.567 kb on - strand, within Atu3899 at 995.650 kb on - strand, within Atu3899 at 995.725 kb on + strand, within Atu3899 at 995.768 kb on - strand, within Atu3899 at 995.780 kb on + strand, within Atu3899 at 995.846 kb on + strand, within Atu3899 at 995.846 kb on + strand, within Atu3899 at 995.942 kb on - strand, within Atu3899 at 995.942 kb on - strand, within Atu3899 at 995.942 kb on - strand, within Atu3899 at 995.980 kb on - strand, within Atu3899 at 995.980 kb on - strand, within Atu3899 at 996.001 kb on + strand, within Atu3899 at 996.045 kb on - strand, within Atu3899 at 996.143 kb on - strand at 996.160 kb on - strand at 996.160 kb on - strand at 996.235 kb on + strand at 996.273 kb on - strand at 996.350 kb on + strand at 996.533 kb on - strand, within Atu3900 at 996.575 kb on + strand, within Atu3900 at 996.687 kb on + strand, within Atu3900 at 996.695 kb on - strand, within Atu3900 at 996.821 kb on + strand, within Atu3900 at 996.879 kb on - strand, within Atu3900 at 996.952 kb on - strand, within Atu3900 at 996.967 kb on + strand, within Atu3900 at 996.967 kb on + strand, within Atu3900 at 996.970 kb on - strand, within Atu3900 at 996.975 kb on - strand, within Atu3900 at 996.992 kb on - strand, within Atu3900 at 996.992 kb on - strand, within Atu3900 at 997.121 kb on + strand, within Atu3900 at 997.129 kb on - strand, within Atu3900 at 997.170 kb on + strand, within Atu3900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorate 400 mM remove 993,943 + -1.1 994,000 - Atu3898 0.13 +0.5 994,000 - Atu3898 0.13 -0.3 994,101 + Atu3898 0.26 -0.6 994,124 + Atu3898 0.29 -0.7 994,134 + Atu3898 0.30 -0.7 994,134 + Atu3898 0.30 +0.6 994,134 + Atu3898 0.30 +0.1 994,228 + Atu3898 0.43 +0.4 994,290 - Atu3898 0.51 +0.2 994,290 - Atu3898 0.51 -0.6 994,348 - Atu3898 0.58 -0.4 994,531 + Atu3898 0.82 -0.3 994,550 + Atu3898 0.84 +0.6 994,570 + Atu3898 0.87 -2.3 994,612 + +0.7 994,732 + -0.4 994,739 - -0.2 994,754 + -0.5 994,844 + +0.2 994,849 + -0.9 994,852 - +1.3 994,852 - -1.4 994,964 + Atu3899 0.11 +0.5 995,027 - Atu3899 0.15 -1.6 995,043 + Atu3899 0.16 +0.0 995,043 + Atu3899 0.16 -0.1 995,081 - Atu3899 0.19 -0.2 995,107 - Atu3899 0.21 -0.2 995,165 - Atu3899 0.25 -0.4 995,191 + Atu3899 0.26 -0.3 995,205 - Atu3899 0.27 -0.2 995,237 + Atu3899 0.30 +0.5 995,341 + Atu3899 0.37 +0.1 995,349 - Atu3899 0.37 +0.1 995,407 - Atu3899 0.42 +0.6 995,472 - Atu3899 0.46 +0.6 995,489 + Atu3899 0.47 -0.8 995,509 + Atu3899 0.49 +0.0 995,548 + Atu3899 0.51 -0.4 995,557 - Atu3899 0.52 -0.2 995,567 - Atu3899 0.53 -0.0 995,650 - Atu3899 0.59 +0.6 995,725 + Atu3899 0.64 -0.2 995,768 - Atu3899 0.67 +0.2 995,780 + Atu3899 0.68 -0.3 995,846 + Atu3899 0.72 -0.5 995,846 + Atu3899 0.72 -0.2 995,942 - Atu3899 0.79 +0.0 995,942 - Atu3899 0.79 +1.1 995,942 - Atu3899 0.79 -0.1 995,980 - Atu3899 0.82 -0.3 995,980 - Atu3899 0.82 -0.3 996,001 + Atu3899 0.83 +0.2 996,045 - Atu3899 0.86 -0.2 996,143 - -0.1 996,160 - -0.5 996,160 - -0.0 996,235 + -0.4 996,273 - -0.0 996,350 + +0.1 996,533 - Atu3900 0.11 +0.0 996,575 + Atu3900 0.12 +0.2 996,687 + Atu3900 0.16 -0.4 996,695 - Atu3900 0.17 -0.7 996,821 + Atu3900 0.21 +0.0 996,879 - Atu3900 0.24 +0.1 996,952 - Atu3900 0.26 -0.1 996,967 + Atu3900 0.27 +0.2 996,967 + Atu3900 0.27 -0.3 996,970 - Atu3900 0.27 +0.4 996,975 - Atu3900 0.27 -0.2 996,992 - Atu3900 0.28 +0.0 996,992 - Atu3900 0.28 +0.5 997,121 + Atu3900 0.33 -0.4 997,129 - Atu3900 0.33 -0.6 997,170 + Atu3900 0.35 -0.1
Or see this region's nucleotide sequence